View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15112_low_6 (Length: 438)
Name: NF15112_low_6
Description: NF15112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15112_low_6 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 12 - 438
Target Start/End: Original strand, 44144307 - 44144735
Alignment:
| Q |
12 |
cagcacagaccaaacttgtatatgtaaatattcttactatggtgattgtgcaatgctttccatccactctcaacctaacatgtgttattcaca--caaac |
109 |
Q |
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| T |
44144307 |
cagcacagaccaaacttgtatatgtaaatattcttactatggtgattgtgcaatgctttccatacactctcaacctaacatgtgttattcacacacaaac |
44144406 |
T |
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| Q |
110 |
aacaataatatgagctcaaaaatcaagcactgacacaattgagggaagggaatttgtgtttaaattgatgatcatagttacttgaattggccggaacctt |
209 |
Q |
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| T |
44144407 |
aacaataatatgagctcaaaaatcaagcactgacacaattgagggaagggaatttgtgattaaattgatgatcatagttacttgaattggccggaacctt |
44144506 |
T |
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| Q |
210 |
cttcaatattgtcaatttgttatgcccttctaagattgtatttatgttgataaccgtgctgctagtatatggtttctgttgactcatcctacaatgaaat |
309 |
Q |
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| T |
44144507 |
cttcaatattgtcaatctgttatgcccttctaagattgtatttatgttgataaccatgctgctagtatatggtttctgttgactcatcctacaatgaaat |
44144606 |
T |
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| Q |
310 |
gaaaatggtagaaacaataaatagtatggtggtactaatataactctagacaaacacctaaatacaagagtaaggtggtggtagtgtacaccttcaaaaa |
409 |
Q |
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| T |
44144607 |
gaaaatggtagaaacaataaatagtatggtggtactaatataactctagacaaacacctaaatacaagagtaaggtggtggtagtgtacaccttcaaaaa |
44144706 |
T |
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| Q |
410 |
gggtaagataatactgaacctattgttga |
438 |
Q |
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| T |
44144707 |
gggtaagataatactgaatctattgttga |
44144735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 40892820 - 40893023
Alignment:
| Q |
12 |
cagcacagaccaaacttgtatatgtaaatattcttactatggtgattgtgcaatgctttccatccactctcaacctaacatgtgttattcaca--caaac |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40892820 |
cagcacagaccaaacttgtatatgtaaatattcttactatggtgattgtgcaatgctttccatccactctcaacctaacatgtgttattcacacacaaac |
40892919 |
T |
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| Q |
110 |
aacaataatatgagctcaaaaatcaagcactgacacaattgagggaagggaatttgtgtttaaattgatgatcatagttacttgaattggccggaacctt |
209 |
Q |
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| T |
40892920 |
aacaataatatgagctaaaaaattaagcactgacacaattgagggaagggaatttgtgtttaaattgatgatcatagtcgcttgaattggccggaacctt |
40893019 |
T |
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| Q |
210 |
cttc |
213 |
Q |
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|||| |
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| T |
40893020 |
cttc |
40893023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 236 - 325
Target Start/End: Original strand, 40893020 - 40893106
Alignment:
| Q |
236 |
cttctaagattgtatttatgttgataaccgtgctgctagtatatggtttctgttgactcatcctacaatgaaatgaaaatggtagaaaca |
325 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40893020 |
cttctaagattgtatttatgttgataaccatgct---agtatatggtttctgttgactcatcctacaatgaaatgaaaatggtacaaaca |
40893106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 409
Target Start/End: Original strand, 40893100 - 40893150
Alignment:
| Q |
359 |
acaaacacctaaatacaagagtaaggtggtggtagtgtacaccttcaaaaa |
409 |
Q |
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| T |
40893100 |
acaaacacctaaatacaagagtaaggtggtggtagtgtacctcttcaaaaa |
40893150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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