View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15112_low_8 (Length: 434)
Name: NF15112_low_8
Description: NF15112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15112_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Original strand, 17517705 - 17518115
Alignment:
| Q |
18 |
aatcagatttgatgtatatagtctagttgttacttgttagagtttattcattgaaaaaccaaaactacaaagatcaatgttgtaatgcatttgtaatctt |
117 |
Q |
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| T |
17517705 |
aatcagatttgatgtatatagtctagttgttacttgttagagtttattcattgaaaaaccaaaactaaaaaaatcaatgttgtaatgcatttgtaatctt |
17517804 |
T |
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| Q |
118 |
aaaacactgcaggtgtatatgttttacactagcactatacttttgatgaacaaagttctttgattttgattgaagaatgagtgcatctgagggatcagct |
217 |
Q |
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| T |
17517805 |
aaaacactgcaggtgtatatgttttacactagcactgtacttttgatgaacaaagttctttgattttgattgaagaatgagtgcatctgagggatcagct |
17517904 |
T |
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| Q |
218 |
gagggagcagcagaagtacatattgttcatgttagtgataggcagaatgttcctctggaagaagtaacatcttcattggagttaaacaaggttgattata |
317 |
Q |
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| T |
17517905 |
gagggagcagcagaagtacatattgttcatgttagtgataggcagaatgttcctctggaagaagtaacatcttcattggagttaagcaaggttgattata |
17518004 |
T |
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| Q |
318 |
caaaagagagaacgaaatcacttcatgcccgttattattttggcattatattcttgataatgaatcttgttgcatggtttttccgtgattatggacaaag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17518005 |
caaaagagagaacgaaatcacttcatgcccgttattgttttggcattatattcttgataatgaatcttgttgcatggtttttccgtgattatggacaaag |
17518104 |
T |
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| Q |
418 |
tgttctacctt |
428 |
Q |
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| T |
17518105 |
tgttctacctt |
17518115 |
T |
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