View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15112_low_9 (Length: 334)
Name: NF15112_low_9
Description: NF15112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15112_low_9 |
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| [»] scaffold0078 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 23 - 163
Target Start/End: Complemental strand, 8566606 - 8566465
Alignment:
| Q |
23 |
gtcagtaagacttttgatacaaggaagcaatcccctttaggaggaacattttaggagatttt-aaatggtttacatgaattatccaaatttaatctttgt |
121 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8566606 |
gtcaataagacttttgatacaaggaagcaatcccctttaggaggaatgttttaggagatttttaaatggtttacatgaattatccaaatttaatctttgt |
8566507 |
T |
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| Q |
122 |
tcttatattaaatatatattaataataagcattaatttatca |
163 |
Q |
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| T |
8566506 |
tcttaaattaaatatatgttaataataagcattaatttatca |
8566465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 200 - 327
Target Start/End: Complemental strand, 8565724 - 8565598
Alignment:
| Q |
200 |
tcttcatttcttcgtgtatttcttatcccctcaaaactctcaattcctcactccaaacaaaatgaaattaagtatacctaatttgattttcttttttcat |
299 |
Q |
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||||||||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8565724 |
tcttcatttcttcgtatattttttatccc-tcaaaaccctcaattcctcactccaaacaaaatgaaattaagtatacctaatttgattttcttttttcat |
8565626 |
T |
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| Q |
300 |
agacccatgagttaaccattctctgctc |
327 |
Q |
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| T |
8565625 |
agacccatgagttaaccattctctgctc |
8565598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 163
Target Start/End: Original strand, 21443136 - 21443171
Alignment:
| Q |
128 |
attaaatatatattaataataagcattaatttatca |
163 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
21443136 |
attaaaaatatattaataataagcattaatttatca |
21443171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 18318962 - 18318929
Alignment:
| Q |
128 |
attaaatatatattaataataagcattaatttat |
161 |
Q |
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| T |
18318962 |
attaaatatatattaatcataagcattaatttat |
18318929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 18399715 - 18399748
Alignment:
| Q |
128 |
attaaatatatattaataataagcattaatttat |
161 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
18399715 |
attaaatatatattaatcataagcattaatttat |
18399748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 31418920 - 31418888
Alignment:
| Q |
131 |
aaatatatattaataataagcattaatttatca |
163 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
31418920 |
aaatatatattaatcataagcattaatttatca |
31418888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 4384 - 4426
Alignment:
| Q |
121 |
ttcttatattaaatatatattaataataagcattaatttatca |
163 |
Q |
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| T |
4384 |
ttcttaaattaaatatctattaatcataagcattaatttatca |
4426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 31584741 - 31584700
Alignment:
| Q |
121 |
ttcttatattaaatatatattaataataagcattaatttatc |
162 |
Q |
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|||||| || |||||||||||||| ||||||||||||||||| |
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| T |
31584741 |
ttcttaaatcaaatatatattaatcataagcattaatttatc |
31584700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 48935089 - 48935121
Alignment:
| Q |
131 |
aaatatatattaataataagcattaatttatca |
163 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
48935089 |
aaatatatattaatcataagcattaatttatca |
48935121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 21777600 - 21777568
Alignment:
| Q |
131 |
aaatatatattaataataagcattaatttatca |
163 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
21777600 |
aaatatatattaatcataagcattaatttatca |
21777568 |
T |
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