View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15113_high_12 (Length: 231)
Name: NF15113_high_12
Description: NF15113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15113_high_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 44882790 - 44883009
Alignment:
| Q |
12 |
tatactccatgttaatcgtgcagattttcaagaactctaaccttgtcccctggcaacttagaagcaaatggaacaatgttaagctaatcctttctagtat |
111 |
Q |
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| T |
44882790 |
tatactccatgataatcgtgcagattttcaagaactctaaccttgtcccctggcaacttagaaacaaatggaacaatgttaagctaatcctttctagtat |
44882889 |
T |
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| Q |
112 |
gaattgtatagttattcatatttttagagaaggaaaccaagtggttattcctttacaaactttggtctatccttatcttattacgtgttttcgaacaata |
211 |
Q |
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| T |
44882890 |
gaattgtatagttattcatatttttagagaaggaaaccaagtggttattcccttgcaaactttggtctatccttatcttattacgtgttttcgaacaata |
44882989 |
T |
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| Q |
212 |
tatctttgtttgctatggaa |
231 |
Q |
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| T |
44882990 |
tacctttgtttgctatggaa |
44883009 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 41341533 - 41341610
Alignment:
| Q |
101 |
ctttctagtatgaattgtatagttattcatatttttagagaaggaaaccaagtggtt-attcctttacaaactttggt |
177 |
Q |
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| T |
41341533 |
ctttctataatgcattgtatagtcactcatatatttagagaaggaaaccaagtggttgattcccttgcaaactttggt |
41341610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 30221963 - 30222007
Alignment:
| Q |
109 |
tatgaattgtatagttattcatatttttagagaaggaaaccaagt |
153 |
Q |
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| T |
30221963 |
tatgaattgtatagttactcacattttcagggaaggaaaccaagt |
30222007 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 17627926 - 17627882
Alignment:
| Q |
109 |
tatgaattgtatagttattcatatttttagagaaggaaaccaagt |
153 |
Q |
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| T |
17627926 |
tatgaattgtatagttactcacattttcagggaaggaaaccaagt |
17627882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 42877708 - 42877752
Alignment:
| Q |
109 |
tatgaattgtatagttattcatatttttagagaaggaaaccaagt |
153 |
Q |
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| T |
42877708 |
tatgaattgtatagtcactcatatttttagggaaggaaatcaagt |
42877752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 4083464 - 4083528
Alignment:
| Q |
113 |
aattgtatagttattcatatttttagagaaggaaaccaag-tggttattcctttacaaactttgg |
176 |
Q |
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| T |
4083464 |
aattgtatagttactcatatctttagggaaggtaaccaagttgcttattcccttgcaaactttgg |
4083528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 32022361 - 32022405
Alignment:
| Q |
109 |
tatgaattgtatagttattcatatttttagagaaggaaaccaagt |
153 |
Q |
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| T |
32022361 |
tatgaattgtatagttactcacattttcagggaaggaaaccaagt |
32022405 |
T |
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