View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15113_high_5 (Length: 342)
Name: NF15113_high_5
Description: NF15113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15113_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 17)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 40409271 - 40408954
Alignment:
| Q |
16 |
atcaagacaccacgtggaatatccaaagttttcagacaaaacaacaactgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggttt |
115 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40409271 |
atcaagacaccatgtggaatatccaaagttttcagacaaaacaacaattgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggttt |
40409172 |
T |
|
| Q |
116 |
ccacccttcaatccctcatcatccatgaagattttgaatccctcacgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatcttccccgc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40409171 |
ccacccttcaatccctcatcatccatgaagattttgaatccctcatgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatcttccccgc |
40409072 |
T |
|
| Q |
216 |
aaaaactgagaaaaacatcgtagcgaggcagtgattgtaccgttgactccacaatcttctcgaagagttcatattcgaacctatggatacacagatcatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||| |
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|
| T |
40409071 |
aaaaactgagaaaaacatcgtagcgaggcagtgattgtaccgttgactccacaatcttcttgaagagttcatattcgaacctatgaatgcacagatcatt |
40408972 |
T |
|
| Q |
316 |
ttaattcatatagtctat |
333 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
40408971 |
ttaattcataaagtctat |
40408954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 40406562 - 40406339
Alignment:
| Q |
16 |
atcaagacaccacgtggaatatccaaagttttcagacaaaacaacaactgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggttt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | ||||||||||||||||||| |
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|
| T |
40406562 |
atcaagacaccacgtggaatatccaaagttttcagacaaaacaacaattgaaagccttgatttttcaattgcttcgagaagagtttgtgaaatttggttt |
40406463 |
T |
|
| Q |
116 |
ccacccttcaatccctcatcatccatgaagattttgaatccctcacgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatcttccccgc |
215 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||| || |||| |||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40406462 |
ccaccctccaatccctcatcatccatgaagatcttgaatccctcattactcaaagcatggtagagaaatcctgtaaaggagtagcgagtatcttccccgc |
40406363 |
T |
|
| Q |
216 |
aaaaactgagaaaaacatcgtagc |
239 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
40406362 |
aaaaactgagaaaaacatcatagc |
40406339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 40457281 - 40457586
Alignment:
| Q |
16 |
atcaagacaccacgtggaatatccaaagttttcagacaaaacaacaactgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggttt |
115 |
Q |
| |
|
|||||||||||| || ||||||||| | ||||| ||||||||||||| ||| ||||||||||||||||||||||| | | ||||||||||||||||||| |
|
|
| T |
40457281 |
atcaagacaccatgtcgaatatccataattttcggacaaaacaacaattgagagccttgatttttcaattgcttttaaaagagtttgtgaaatttggttt |
40457380 |
T |
|
| Q |
116 |
ccacccttcaatccctcatcatccatgaagattttgaatccctcacgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatcttccccgc |
215 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
40457381 |
ccaccctccaatccctcatcatccatgaagatcttgaatccctctagacgcaaagcatgatagaggaatcccgtaaaggagtagcgagtatcttccccgc |
40457480 |
T |
|
| Q |
216 |
aaaaactgagaaaaacatcgtagcgaggcagtgattgtaccgttgactccacaatcttctcgaagagttcatattcgaacctatggatacacagatcatt |
315 |
Q |
| |
|
||||||| ||||||||||||||||| || || |||||||| ||| ||||||||||||| | || ||||||||||||||| ||||| || || | ||| || |
|
|
| T |
40457481 |
aaaaacttagaaaaacatcgtagcggggtagcgattgtactgttaactccacaatcttttggatgagttcatattcgaatctatgaatgcaaaaatcctt |
40457580 |
T |
|
| Q |
316 |
ttaatt |
321 |
Q |
| |
|
|||||| |
|
|
| T |
40457581 |
ttaatt |
40457586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 44 - 233
Target Start/End: Complemental strand, 40362501 - 40362312
Alignment:
| Q |
44 |
ttttcagacaaaacaacaactgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggtttccacccttcaatccctcatcatccatga |
143 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40362501 |
ttttcagacaaaacaacaattgaaagccttgatttttcaattgctttgagtagagtttgtgaaatttggtttccaccctccaatccctcatcatccatga |
40362402 |
T |
|
| Q |
144 |
agattttgaatccctcacgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatcttccccgcaaaaactgagaaaaacat |
233 |
Q |
| |
|
|||| |||||||||||||||| |||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40362401 |
agatcttgaatccctcacgacacaaagcatgatagaggaatcccgtaaaggagtagcgagtatcttccccgcaaaaacttagaaaaacat |
40362312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 210
Target Start/End: Complemental strand, 40326575 - 40326404
Alignment:
| Q |
39 |
caaagttttcagacaaaacaacaactgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggtttccacccttcaatccctcatcatc |
138 |
Q |
| |
|
||||||||||||| |||||||||| ||||| ||||||| ||||||||||||| || || | |||||||| || |||||||||||| |||||||||| |
|
|
| T |
40326575 |
caaagttttcagagaaaacaacaattgaaatccttgatgcctcaattgctttgattagagatgatgaaatttcattcccacccttcaattcctcatcatc |
40326476 |
T |
|
| Q |
139 |
catgaagattttgaatccctcacgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatcttc |
210 |
Q |
| |
|
||||||| | ||||| ||||| |||| || | || ||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
40326475 |
catgaaggtcttgaacccctctcgacacagaatattatagagaaaacctgtgaaagagtagcgagtatcttc |
40326404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 196
Target Start/End: Original strand, 40363351 - 40363481
Alignment:
| Q |
66 |
aaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggtttccacccttcaatccctcatcatccatgaagattttgaatccctcacgacg |
165 |
Q |
| |
|
|||||||||||| ||| ||| ||||||| | |||| |||||| |||||||||||| | |||||||| ||||||||||| ||||||||||||||||||| | |
|
|
| T |
40363351 |
aaagccttgattgttcgatttctttgagaagagttagtgaaacttggtttccaccatccaatcccttatcatccatgacgattttgaatccctcacgatg |
40363450 |
T |
|
| Q |
166 |
caaatcatgatagagaaatcctgtaaaagag |
196 |
Q |
| |
|
||| ||||||||| || || |||||||||| |
|
|
| T |
40363451 |
aaaagcatgatagataattcatgtaaaagag |
40363481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 230
Target Start/End: Complemental strand, 40283647 - 40283456
Alignment:
| Q |
39 |
caaagttttcagacaaaacaacaactgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggtttccacccttcaatccctcatcatc |
138 |
Q |
| |
|
||||||||||||| |||||||||| ||||| ||||||| ||||||||||||| || || | |||||||| | || || |||| | |||||||||| |
|
|
| T |
40283647 |
caaagttttcagaaaaaacaacaattgaaatccttgatgcctcaattgctttgactagagatgatgaaatttcctccccgcctttcagttcctcatcatc |
40283548 |
T |
|
| Q |
139 |
catgaagattttgaatccctcacgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatcttccccgcaaaaactgagaaaaa |
230 |
Q |
| |
|
||||||| | ||||| ||||| || | |||| ||| ||||||||| ||||||||||| | |||||||||||||| | ||||||||| |||| |
|
|
| T |
40283547 |
catgaaggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaa |
40283456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 40256888 - 40257098
Alignment:
| Q |
32 |
gaatatccaaagttttcagacaaaacaacaactgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggtttccacccttcaatccct |
131 |
Q |
| |
|
|||||| |||||||||| || ||||||| || |||||||||||| ||||||||| ||||| | | |||||||||||| ||||||| |||||| |
|
|
| T |
40256888 |
gaatatgcaaagttttcggataaaacaataatggaaagccttgatgcttcaattgcattgagaagtgaaagtgaaatttggtcaccaccctccaatcctc |
40256987 |
T |
|
| Q |
132 |
catcatccatgaagattttgaatccctcacgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatcttccccgcaaaaactgagaaaaac |
231 |
Q |
| |
|
| |||||||||||| |||| ||||| | | | |||| || |||||||| | ||||||||||| || ||||||||||| || | ||| |||||||||| |
|
|
| T |
40256988 |
cttcatccatgaaggttttaaatccgacctggcacaaagcacgatagagagagcctgtaaaagaataacgagtatcttctcctcgaaagctgagaaaaat |
40257087 |
T |
|
| Q |
232 |
atcgtagcgag |
242 |
Q |
| |
|
|| |||||||| |
|
|
| T |
40257088 |
atggtagcgag |
40257098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 44 - 209
Target Start/End: Complemental strand, 40311290 - 40311125
Alignment:
| Q |
44 |
ttttcagacaaaacaacaactgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggtttccacccttcaatccctcatcatccatga |
143 |
Q |
| |
|
|||| ||| ||||||| |||||||| ||||||| ||||||||||||| || || |||||||| || |||||||||||| |||||||||||||||| |
|
|
| T |
40311290 |
tttttagagaaaacaataactgaaatccttgatgcctcaattgctttgattagagaagatgaaatttcgtctccacccttcaacccctcatcatccatga |
40311191 |
T |
|
| Q |
144 |
agattttgaatccctcacgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatctt |
209 |
Q |
| |
|
|| | ||||| || || || | | | ||| ||||||||| || |||||||||| |||||||||| |
|
|
| T |
40311190 |
aggtcttgaacccttcccggcatagagcatcatagagaaaacccgtaaaagagtcacgagtatctt |
40311125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 40388482 - 40388436
Alignment:
| Q |
16 |
atcaagacaccacgtggaatatccaaagttttcagacaaaacaacaa |
62 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
40388482 |
atcaagacaccatgtcgaatatccaaagttttcagacaaaacaacaa |
40388436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 40334000 - 40333957
Alignment:
| Q |
185 |
cctgtaaaagagtagcgagtatcttccccgcaaaaactgagaaa |
228 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
40334000 |
cctgtaaaagagtagcgagtatcttcccctctaaaactgagaaa |
40333957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 40387278 - 40387235
Alignment:
| Q |
185 |
cctgtaaaagagtagcgagtatcttccccgcaaaaactgagaaa |
228 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
40387278 |
cctgtaaaagagtagcgagtatcttcccctctaaaactgagaaa |
40387235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 40278048 - 40277990
Alignment:
| Q |
16 |
atcaagacaccacgtggaatatccaaagttttcagacaaaacaacaactgaaagccttg |
74 |
Q |
| |
|
|||||||||||| |||||| | || ||||||||||||||||||||| ||||||||||| |
|
|
| T |
40278048 |
atcaagacaccatgtggaacttgcatagttttcagacaaaacaacaattgaaagccttg |
40277990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 40377202 - 40377061
Alignment:
| Q |
16 |
atcaagacaccacgtggaatatccaaagttttcagacaaaacaacaactgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggttt |
115 |
Q |
| |
|
|||||||||||| ||||||| | || |||||||||||||||||| || |||||| |||| | ||||||||| || | | || ||||||||| ||| | |
|
|
| T |
40377202 |
atcaagacaccatgtggaatttgcatagttttcagacaaaacaataattgaaagtcttgttgcttcaattgcatttcgaagagaatgtgaaattcggtct |
40377103 |
T |
|
| Q |
116 |
ccacccttcaatccctcatcatccatgaagattttgaatccc |
157 |
Q |
| |
|
||| | |||||| | |||||||||||| || ||||||||| |
|
|
| T |
40377102 |
ccagtgtgcaatcctttatcatccatgaaaatcttgaatccc |
40377061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 40303604 - 40303504
Alignment:
| Q |
124 |
caatccctcatcatccatgaagattttgaatccctcacgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatcttccccgcaaaaactg |
223 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||| || |||| | | ||| ||||||||| || ||||||||||| ||||||||||| || | ||||||| |
|
|
| T |
40303604 |
caatcccccataatccatgaatgttttgaatccttctcgacagagagcatcatagagaaaacccgtaaaagagtaccgagtatcttctcctctaaaactg |
40303505 |
T |
|
| Q |
224 |
a |
224 |
Q |
| |
|
| |
|
|
| T |
40303504 |
a |
40303504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 40334169 - 40334098
Alignment:
| Q |
16 |
atcaagacaccacgtggaatatccaaagttttcagacaaaacaacaactgaaagccttgatttttcaattgc |
87 |
Q |
| |
|
|||||||||||| ||||||| | || |||||||||||||||||| || ||||| |||||| ||||||||| |
|
|
| T |
40334169 |
atcaagacaccatgtggaatttgcatagttttcagacaaaacaataatcgaaagtcttgatgcttcaattgc |
40334098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 40387447 - 40387376
Alignment:
| Q |
16 |
atcaagacaccacgtggaatatccaaagttttcagacaaaacaacaactgaaagccttgatttttcaattgc |
87 |
Q |
| |
|
|||||||||||| ||||||| | || |||||||||||||||||| || ||||| |||||| ||||||||| |
|
|
| T |
40387447 |
atcaagacaccatgtggaatttgcatagttttcagacaaaacaataatcgaaagtcttgatgcttcaattgc |
40387376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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