View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15113_low_11 (Length: 267)
Name: NF15113_low_11
Description: NF15113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15113_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 12897686 - 12897433
Alignment:
| Q |
1 |
ttacctttaaaatgccactagtatgaaaatagacatgtgaatttaacttcctttcattctagctgtagtgtttgaagacatttgataataaacatgtgac |
100 |
Q |
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| T |
12897686 |
ttacctttaaaatgccactagtatgaaaatagacatgtgaatttaacttcctttcattctagctgcagtgtttgaagacatttgataataaacatgtgac |
12897587 |
T |
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| Q |
101 |
tggtgtttcagatatcaggaaaaaagattggaattgttggtttgggaagaattggcttagaagtcgcaaagaggcttgaagcattcagttgcattatatc |
200 |
Q |
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| T |
12897586 |
tggtgtttcagatatcaggaaaaaagattggaattgttggtttgggaagaattggcttagaagttgcaaagaggcttgaaacattcggttgcacgttatc |
12897487 |
T |
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| Q |
201 |
atacaactctagaaacaaaaaaccattagtttcatactctttctattccagtgt |
254 |
Q |
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| T |
12897486 |
atacaactctagaaacaaaaaaccattagtttcatacccttattattcaagtgt |
12897433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 83 - 256
Target Start/End: Complemental strand, 12885966 - 12885793
Alignment:
| Q |
83 |
tgataataaacatgtgactggtgtttcagatatcaggaaaaaagattggaattgttggtttgggaagaattggcttagaagtcgcaaagaggcttgaagc |
182 |
Q |
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|||| |||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||| |
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| T |
12885966 |
tgatgataaacatgtgactggtgtttcagttaacaggaaaaaagattggaattgttggtatgggaagaatcggctcagaagtcgcaaagaggcttgaagc |
12885867 |
T |
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| Q |
183 |
attcagttgcattatatcatacaactctagaaacaaaaaaccattagtttcatactctttctattccagtgtct |
256 |
Q |
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| T |
12885866 |
attcagttgcatgatatcatacaactctagaaacaaaaaaccattagtttcgtacccttactattccactgtct |
12885793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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