View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15113_low_13 (Length: 246)
Name: NF15113_low_13
Description: NF15113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15113_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 29953477 - 29953679
Alignment:
| Q |
26 |
catgaagaaactaataatgtagacaaaactcatcatgaagactttgttgacatacttctttcatttatgaaccaaaccattgatctaggaaatgaagaaa |
125 |
Q |
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|||||| |||| | |||||||||||||| || ||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| |
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| T |
29953477 |
catgaacaaaccactaatgtagacaaaaatcgccatgaagactttgttgacatacttcttacatttatgcaccaaaccattgatctagaaaatgaagaaa |
29953576 |
T |
|
| Q |
126 |
atcatgtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggctatgtccga |
225 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||||||| | ||||| |
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| T |
29953577 |
atcatttcattgatcgaactaacatcaaggcaattttactagacttgactgtggcagcaattgatacatctgctaccgtgattgaatgggctttatccga |
29953676 |
T |
|
| Q |
226 |
act |
228 |
Q |
| |
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||| |
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|
| T |
29953677 |
act |
29953679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 29995232 - 29995427
Alignment:
| Q |
22 |
agaacatgaagaaactaataatgtagacaaaactcatcatgaagactttgttgacatacttctttcatttatgaaccaaaccattgatctaggaaatgaa |
121 |
Q |
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|||||||||| || || ||||||| |||||||||||||| |||| ||||| ||||||||||||||| ||||| |||||||||||||| | | |||| |
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| T |
29995232 |
agaacatgaacaagctgctaatgtaaacaaaactcatcataaagattttgtagacatacttctttcaattatgcaccaaaccattgatgtcgagggtgaa |
29995331 |
T |
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| Q |
122 |
gaaaatcatgtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggct |
217 |
Q |
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| T |
29995332 |
caaaatctcgtcattgatcgaactaacatcaaggctattttgctcgacatgatagtggcagcaatcgatacatctgctacctcgattgaatgggct |
29995427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 46 - 228
Target Start/End: Original strand, 29944564 - 29944746
Alignment:
| Q |
46 |
agacaaaactcatcatgaagactttgttgacatacttctttcatttatgaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgatcgaact |
145 |
Q |
| |
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||||||||||| ||||||||||||||| ||||||||||| | |||| | |||||| |||||||| || | |||| ||||||||||||||||||||||| |
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| T |
29944564 |
agacaaaactcgtcatgaagactttgtagacatacttctcacttttaagcaccaaaacattgatcatgggagtgaacaaaatcatgtcattgatcgaact |
29944663 |
T |
|
| Q |
146 |
aacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggctatgtccgaact |
228 |
Q |
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| T |
29944664 |
aacatcaaagctattttactagacatggttgtggcatcatttagtacatctgctaccacaattgagtgggctttatccgaact |
29944746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 217
Target Start/End: Original strand, 29946516 - 29946706
Alignment:
| Q |
26 |
catgaagaaactaataatgtagacaaaactcatcatgaagactttgttgacatacttctttcatttatgaaccaaaccattgatctaggaaatgaagaaa |
125 |
Q |
| |
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|||||| |||| | |||||||||||||||||||||||||||||| || |||||||| || ||| ||| |||||||||||| |||| | |||||| | | |
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| T |
29946516 |
catgaacaaacaactaatgtagacaaaactcatcatgaagacttcgtagacatactactctcaattaagaaccaaaccatagatcaaaagaatgaacaga |
29946615 |
T |
|
| Q |
126 |
atcatgtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggct |
217 |
Q |
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| T |
29946616 |
aacatgttattgatcgaccaaacattaaggc-atattactagacacggttatggcagcaattgaaacatctgctaccgcgattgaatgggct |
29946706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 63 - 217
Target Start/End: Complemental strand, 30043936 - 30043782
Alignment:
| Q |
63 |
aagactttgttgacatacttctttcatttatgaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgatcgaactaacatcaaggcaatttt |
162 |
Q |
| |
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|||| ||||| ||||||||||||||| ||||| |||||||||||||| | | |||| |||||| |||||||||||||||||||||||||| ||||| |
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| T |
30043936 |
aagattttgtagacatacttctttcaattatgcaccaaaccattgatattgagggtgaacaaaatctcgtcattgatcgaactaacatcaaggctatttt |
30043837 |
T |
|
| Q |
163 |
actagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggct |
217 |
Q |
| |
|
|| |||||| | ||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
30043836 |
gctcgacatgatagtggcagcaattgatacatctgctacctcgattgaatgggct |
30043782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 30007046 - 30007216
Alignment:
| Q |
47 |
gacaaaactcatcatgaagactttgttgacatacttctttcatttatgaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgatcgaacta |
146 |
Q |
| |
|
|||||||||| | ||||||||||||| ||||||||||||||| ||||| |||||||||||||| | | |||| |||||| |||||||||||||||| |
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| T |
30007046 |
gacaaaactcgtaatgaagactttgtagacatacttctttcaattatgcaccaaaccattgatgtcgagggtgaacaaaatctcgtcattgatcgaacta |
30007145 |
T |
|
| Q |
147 |
acatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggct |
217 |
Q |
| |
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|||||||||| ||||| || |||||| | | |||| || || |||||||||| ||| ||||||| |||||| |
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| T |
30007146 |
acatcaaggctattttgctcgacatgatagcggcatcagttcatacatctgctaccacgattgagtgggct |
30007216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 208
Target Start/End: Complemental strand, 30068477 - 30068309
Alignment:
| Q |
40 |
taatgtagacaaaactcatcatgaagactttgttgacatacttctttcatttatgaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgat |
139 |
Q |
| |
|
||||||| |||||||||||||| |||| || || ||||||||||||||| ||||| | |||||||||||| | | |||| |||||| || |||||| |
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| T |
30068477 |
taatgtaaacaaaactcatcataaagatttcgtagacatacttctttcaattatgcatcaaaccattgatgtcgagggtgaacaaaatctcgtaattgat |
30068378 |
T |
|
| Q |
140 |
cgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgatt |
208 |
Q |
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||| |||||||||| || ||||| || |||||| | ||||||||||||||||||||||| ||| ||||| |
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| T |
30068377 |
cgatctaacatcaaagctattttgctcgacatgatagtggcagcaattgatacatctgctacctcgatt |
30068309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 29964759 - 29964912
Alignment:
| Q |
40 |
taatgtagacaaaactcatcatgaagactttgttgacatacttctttcatttatgaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgat |
139 |
Q |
| |
|
||||||||||||| || ||||||||| || |||| |||||||| ||| || || ||||||| | |||| || ||||||| ||| | ||| ||||| |
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|
| T |
29964759 |
taatgtagacaaagttcgtcatgaagatttcattgatatacttctctcaattgtgcaccaaacggtagatccagaaaatgaacaaagtggtgttattgac |
29964858 |
T |
|
| Q |
140 |
cgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgataca |
193 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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|
| T |
29964859 |
agaactaacatcaaggcaattttactagacatgattgtggcaggaattgataca |
29964912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 193
Target Start/End: Complemental strand, 30010039 - 30009886
Alignment:
| Q |
40 |
taatgtagacaaaactcatcatgaagactttgttgacatacttctttcatttatgaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgat |
139 |
Q |
| |
|
||||||||||||| || ||||||||| || |||| |||||||| ||| || || ||||||| | |||| || ||||||| ||| | ||| ||||| |
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|
| T |
30010039 |
taatgtagacaaagttcgtcatgaagatttcattgatatacttctctcaattgtgcaccaaacggtagatccagaaaatgaacaaagtggtgttattgac |
30009940 |
T |
|
| Q |
140 |
cgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgataca |
193 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
30009939 |
agaactaacatcaaggcaattttactagacatgattgtggcaggaattgataca |
30009886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 30001014 - 30001079
Alignment:
| Q |
131 |
gtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatct |
196 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||| || |||||| | | |||| |||||||||||||| |
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|
| T |
30001014 |
gtcattgatcgaacgatcatcaaggctattttgctcgacatgataggggcatcaattgatacatct |
30001079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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