View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15113_low_16 (Length: 228)

Name: NF15113_low_16
Description: NF15113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15113_low_16
NF15113_low_16
[»] chr2 (30 HSPs)
chr2 (1-121)||(44882997-44883117)
chr2 (115-208)||(38917517-38917610)
chr2 (113-208)||(9047748-9047843)
chr2 (117-204)||(13344530-13344617)
chr2 (118-208)||(44398728-44398818)
chr2 (119-208)||(3055600-3055689)
chr2 (119-208)||(37990012-37990101)
chr2 (119-208)||(41478638-41478727)
chr2 (120-208)||(13197710-13197798)
chr2 (120-208)||(15372268-15372356)
chr2 (120-208)||(15896884-15896972)
chr2 (118-208)||(44397589-44397679)
chr2 (119-204)||(6648518-6648603)
chr2 (127-208)||(16243790-16243871)
chr2 (120-204)||(12337937-12338021)
chr2 (119-208)||(37666609-37666698)
chr2 (119-208)||(41492895-41492984)
chr2 (120-208)||(16044317-16044405)
chr2 (126-204)||(44804584-44804662)
chr2 (115-204)||(30099177-30099266)
chr2 (159-208)||(4683971-4684020)
chr2 (127-208)||(12170406-12170487)
chr2 (132-201)||(16734832-16734901)
chr2 (49-121)||(32489196-32489267)
chr2 (119-176)||(15271053-15271110)
chr2 (160-208)||(41453101-41453149)
chr2 (119-176)||(15258790-15258847)
chr2 (135-201)||(11582647-11582713)
chr2 (120-174)||(31150653-31150707)
chr2 (135-176)||(15243990-15244031)
[»] chr5 (25 HSPs)
chr5 (119-208)||(26350349-26350438)
chr5 (118-208)||(21575988-21576078)
chr5 (119-208)||(9395392-9395481)
chr5 (119-208)||(13033093-13033182)
chr5 (119-208)||(36563537-36563626)
chr5 (119-208)||(41989406-41989495)
chr5 (120-208)||(37148955-37149043)
chr5 (117-208)||(11795210-11795301)
chr5 (126-208)||(23359984-23360066)
chr5 (119-208)||(13103066-13103155)
chr5 (115-208)||(37641996-37642089)
chr5 (116-208)||(17025666-17025758)
chr5 (120-207)||(583032-583118)
chr5 (120-204)||(6126870-6126954)
chr5 (120-208)||(20848116-20848203)
chr5 (126-208)||(4444002-4444084)
chr5 (127-201)||(2366345-2366419)
chr5 (132-201)||(966197-966266)
chr5 (123-202)||(3549550-3549629)
chr5 (133-201)||(39290823-39290891)
chr5 (119-174)||(26395084-26395139)
chr5 (156-202)||(36595810-36595856)
chr5 (179-208)||(38361750-38361779)
chr5 (136-208)||(35585322-35585394)
chr5 (132-187)||(36523396-36523453)
[»] chr3 (34 HSPs)
chr3 (117-208)||(8437467-8437558)
chr3 (116-208)||(49823377-49823469)
chr3 (119-208)||(10298021-10298110)
chr3 (119-208)||(40690995-40691084)
chr3 (120-208)||(19557052-19557140)
chr3 (120-208)||(34080030-34080118)
chr3 (120-208)||(35513515-35513603)
chr3 (116-208)||(37508963-37509055)
chr3 (120-208)||(48340439-48340527)
chr3 (126-208)||(17653754-17653836)
chr3 (118-208)||(22721973-22722063)
chr3 (118-208)||(51406715-51406805)
chr3 (127-208)||(8817393-8817474)
chr3 (119-208)||(36095679-36095768)
chr3 (120-208)||(2787832-2787920)
chr3 (120-208)||(38964434-38964522)
chr3 (132-208)||(42170358-42170434)
chr3 (117-208)||(33942929-33943020)
chr3 (117-208)||(46208072-46208163)
chr3 (126-208)||(4238636-4238718)
chr3 (126-208)||(9111500-9111582)
chr3 (126-208)||(42507361-42507443)
chr3 (134-208)||(44785410-44785484)
chr3 (120-208)||(21295326-21295414)
chr3 (120-208)||(6013336-6013424)
chr3 (119-178)||(9213515-9213574)
chr3 (120-202)||(5323254-5323337)
chr3 (120-167)||(47188956-47189003)
chr3 (127-209)||(26019487-26019569)
chr3 (127-176)||(8092595-8092644)
chr3 (156-201)||(8092637-8092682)
chr3 (167-208)||(8951943-8951984)
chr3 (120-185)||(34988140-34988205)
chr3 (119-187)||(9027141-9027209)
[»] chr6 (22 HSPs)
chr6 (115-208)||(13853588-13853681)
chr6 (118-208)||(6068608-6068698)
chr6 (118-208)||(6330157-6330247)
chr6 (118-208)||(11572143-11572233)
chr6 (119-208)||(26602365-26602454)
chr6 (120-208)||(2830377-2830465)
chr6 (120-208)||(8382969-8383057)
chr6 (119-208)||(8099572-8099661)
chr6 (119-204)||(9644742-9644827)
chr6 (119-204)||(9650759-9650844)
chr6 (115-208)||(35030996-35031089)
chr6 (127-208)||(33052801-33052882)
chr6 (132-208)||(8417805-8417881)
chr6 (132-208)||(28747146-28747222)
chr6 (134-208)||(6143596-6143670)
chr6 (118-199)||(22896513-22896594)
chr6 (132-208)||(17992030-17992106)
chr6 (132-177)||(8186440-8186485)
chr6 (120-191)||(7596977-7597048)
chr6 (158-204)||(13043804-13043850)
chr6 (120-174)||(32045157-32045211)
chr6 (118-194)||(3788093-3788169)
[»] chr8 (29 HSPs)
chr8 (116-208)||(54608-54700)
chr8 (118-208)||(2890160-2890250)
chr8 (126-208)||(31654655-31654737)
chr8 (119-208)||(7785777-7785866)
chr8 (119-208)||(39571202-39571291)
chr8 (120-208)||(6552697-6552785)
chr8 (120-207)||(33289261-33289348)
chr8 (126-208)||(7012213-7012295)
chr8 (118-208)||(25600998-25601088)
chr8 (119-208)||(7805698-7805787)
chr8 (119-208)||(12763653-12763742)
chr8 (119-208)||(43199353-43199442)
chr8 (119-208)||(44498186-44498275)
chr8 (120-208)||(3304278-3304366)
chr8 (126-208)||(12343146-12343228)
chr8 (119-208)||(32114474-32114563)
chr8 (119-204)||(32211362-32211447)
chr8 (134-208)||(15888366-15888440)
chr8 (135-208)||(13578899-13578972)
chr8 (119-201)||(27422239-27422321)
chr8 (117-201)||(28463660-28463744)
chr8 (126-201)||(8587219-8587294)
chr8 (127-201)||(13246801-13246875)
chr8 (127-201)||(24691986-24692059)
chr8 (121-173)||(30171483-30171535)
chr8 (135-194)||(17006967-17007026)
chr8 (135-194)||(17570221-17570280)
chr8 (126-178)||(17006917-17006969)
chr8 (126-178)||(17570278-17570330)
[»] chr4 (33 HSPs)
chr4 (115-207)||(52756718-52756810)
chr4 (117-208)||(24704412-24704503)
chr4 (119-208)||(5986918-5987007)
chr4 (120-208)||(6121893-6121981)
chr4 (120-208)||(47833653-47833741)
chr4 (120-208)||(51894582-51894670)
chr4 (118-208)||(3993018-3993108)
chr4 (118-208)||(53337412-53337502)
chr4 (119-208)||(33621838-33621927)
chr4 (119-208)||(47838616-47838705)
chr4 (119-208)||(48336305-48336394)
chr4 (120-208)||(3372163-3372251)
chr4 (120-208)||(20538686-20538774)
chr4 (120-208)||(42797774-42797862)
chr4 (120-208)||(46797767-46797855)
chr4 (119-209)||(3422101-3422191)
chr4 (118-208)||(3904681-3904771)
chr4 (119-208)||(41469765-41469854)
chr4 (121-208)||(40913190-40913277)
chr4 (134-208)||(7579352-7579426)
chr4 (126-208)||(43900591-43900673)
chr4 (127-208)||(41615683-41615764)
chr4 (119-201)||(17344262-17344344)
chr4 (159-208)||(33551243-33551292)
chr4 (159-208)||(25855125-25855174)
chr4 (159-208)||(26231619-26231668)
chr4 (126-191)||(45478151-45478216)
chr4 (156-201)||(50430454-50430499)
chr4 (134-187)||(13601075-13601128)
chr4 (120-187)||(4780358-4780425)
chr4 (119-174)||(17236864-17236919)
chr4 (119-177)||(17344212-17344270)
chr4 (124-184)||(1716365-1716425)
[»] chr1 (36 HSPs)
chr1 (120-208)||(26471065-26471153)
chr1 (119-208)||(14984879-14984968)
chr1 (115-208)||(47216694-47216787)
chr1 (120-208)||(27159358-27159446)
chr1 (120-208)||(31842795-31842883)
chr1 (120-208)||(39401966-39402054)
chr1 (120-208)||(44668093-44668181)
chr1 (126-208)||(9981689-9981771)
chr1 (118-208)||(25694361-25694451)
chr1 (119-208)||(47969737-47969826)
chr1 (120-208)||(11795975-11796063)
chr1 (120-208)||(47777481-47777569)
chr1 (126-208)||(44955212-44955294)
chr1 (119-208)||(1050930-1051019)
chr1 (119-204)||(34042742-34042827)
chr1 (119-208)||(12483627-12483716)
chr1 (135-208)||(47588352-47588425)
chr1 (111-198)||(11989833-11989920)
chr1 (119-202)||(17556801-17556884)
chr1 (140-204)||(23278021-23278085)
chr1 (119-201)||(11897103-11897185)
chr1 (1-106)||(41341651-41341756)
chr1 (117-201)||(37552190-37552274)
chr1 (119-177)||(21537942-21538000)
chr1 (115-178)||(16448180-16448243)
chr1 (127-201)||(1598389-1598461)
chr1 (156-201)||(16448144-16448189)
chr1 (120-175)||(11025503-11025558)
chr1 (132-187)||(12062622-12062677)
chr1 (132-177)||(12062572-12062617)
chr1 (127-185)||(17167768-17167826)
chr1 (129-174)||(12043613-12043658)
chr1 (154-187)||(29855082-29855115)
chr1 (127-187)||(12043666-12043726)
chr1 (161-201)||(12069535-12069575)
chr1 (119-179)||(44953062-44953122)
[»] chr7 (21 HSPs)
chr7 (118-208)||(9268798-9268888)
chr7 (119-208)||(1738446-1738535)
chr7 (119-208)||(7240791-7240880)
chr7 (119-208)||(36583437-36583526)
chr7 (120-208)||(94318-94406)
chr7 (120-208)||(46840902-46840990)
chr7 (119-208)||(7482267-7482356)
chr7 (119-208)||(28536750-28536839)
chr7 (119-208)||(38063912-38064001)
chr7 (120-208)||(22285741-22285829)
chr7 (120-208)||(23314139-23314227)
chr7 (120-208)||(31319399-31319487)
chr7 (117-208)||(1565726-1565817)
chr7 (126-208)||(33418418-33418500)
chr7 (126-208)||(38441502-38441584)
chr7 (132-208)||(36016208-36016284)
chr7 (126-204)||(4790294-4790372)
chr7 (127-202)||(40840126-40840201)
chr7 (134-187)||(9636118-9636171)
chr7 (127-191)||(7269412-7269476)
chr7 (156-208)||(9575451-9575503)
[»] scaffold0482 (1 HSPs)
scaffold0482 (119-208)||(12902-12991)
[»] scaffold0204 (1 HSPs)
scaffold0204 (119-208)||(23827-23916)
[»] scaffold1707 (1 HSPs)
scaffold1707 (132-208)||(1377-1453)
[»] scaffold0009 (1 HSPs)
scaffold0009 (120-208)||(49547-49635)
[»] scaffold0464 (1 HSPs)
scaffold0464 (119-208)||(6130-6219)
[»] scaffold0650 (1 HSPs)
scaffold0650 (156-201)||(21-66)
[»] scaffold0063 (1 HSPs)
scaffold0063 (118-187)||(53339-53408)
[»] scaffold0011 (2 HSPs)
scaffold0011 (119-201)||(231302-231384)
scaffold0011 (120-178)||(231375-231433)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 44882997 - 44883117
Alignment:
Q  1 gtttgctatggaatcttttgtgaagaacaaaattggtttatcttccaataggttttcatcttcttgagggagtcttggtttggtcccctccctctttttt 100  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44882997 gtttgctatggaatcttttgtgaagaacaagattggtttaccttccaatagattttcatcttcttgagggaatcttggtttggtcccctccctctttttt 44883096  T
Q  101 gtacctattctctcttttata 121  Q
    |||||||||||| ||||||||    
T  44883097 gtacctattctcccttttata 44883117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 38917517 - 38917610
Alignment:
Q  115 ttttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38917517 ttttatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 38917610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 9047748 - 9047843
Alignment:
Q  113 tcttttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9047748 tctttaatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 9047843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 117 - 204
Target Start/End: Complemental strand, 13344617 - 13344530
Alignment:
Q  117 ttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattca 204  Q
    |||||||| ||||| |||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13344617 ttatactccctccggtcctatttataagagaattttggatcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattca 13344530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 44398818 - 44398728
Alignment:
Q  118 tatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44398818 tatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 44398728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 3055689 - 3055600
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3055689 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 3055600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 37990012 - 37990101
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37990012 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 37990101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 41478638 - 41478727
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41478638 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 41478727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 13197710 - 13197798
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13197710 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 13197798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 15372356 - 15372268
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15372356 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctcgttaaaaattcagtccaaatacattcacttt 15372268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 15896972 - 15896884
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15896972 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 15896884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 44397679 - 44397589
Alignment:
Q  118 tatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||| | ||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44397679 tatactccccccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 44397589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 204
Target Start/End: Original strand, 6648518 - 6648603
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattca 204  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6648518 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattca 6648603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 16243790 - 16243871
Alignment:
Q  127 tccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16243790 tccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 16243871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 12337937 - 12338021
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattca 204  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12337937 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattca 12338021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 37666609 - 37666698
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||||| ||||||||||||||| |||||||||||||| ||||||||||||||||    
T  37666609 atactccctccggtcctatttataagagaattttgggtcaactaaagttgatgtatctagttaaaaattcagttcaaatacattcacttt 37666698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 41492895 - 41492984
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||| ||||  ||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  41492895 atactccctccggtcctatttataagagaaatttgggtcaacaaaagttgatgtatctagttaaaaattctgtccaaatacattcacttt 41492984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 16044317 - 16044405
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||| ||||||||||||||| |||||||||||||| ||||||||||||||||    
T  16044317 tactccctccggtcctatttataagagaattttgggtcaactaaagttgatgtatctagttaaaaattcagttcaaatacattcacttt 16044405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 126 - 204
Target Start/End: Original strand, 44804584 - 44804662
Alignment:
Q  126 ctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattca 204  Q
    ||||| |||||||||||| |||||||| | | ||||||||||||||||||| |||||||||||||||||||||||||||    
T  44804584 ctccggtcctatttataagagaattttaagttaacaaaagttgatgtatctagttaaaaattcagtccaaatacattca 44804662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 30099177 - 30099266
Alignment:
Q  115 ttttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattca 204  Q
    |||||||||| ||||| |||||||||| | |||||||||  |||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  30099177 ttttatactccctccggtcctatttattagagaattttgggtcaacaaaagttgatgtatctaattaaaaattcaatccaaatacattca 30099266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 4683971 - 4684020
Alignment:
Q  159 acaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4683971 acaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 4684020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 12170406 - 12170487
Alignment:
Q  127 tccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||| ||||||||| ||||  |||  ||||||||||||||||||| | ||||||||||||||||||||||||| |||||    
T  12170406 tccgatcttatttataagagaaacttgggtcaacaaaagttgatgtatttagttaaaaattcagtccaaatacattaacttt 12170487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 16734901 - 16734832
Alignment:
Q  132 tcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacat 201  Q
    |||||||||||| ||||  |||| | ||||||||||||||||| ||||||||||||||||||| ||||||    
T  16734901 tcctatttataagagaaagttgagtaaacaaaagttgatgtatttggttaaaaattcagtccagatacat 16734832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 32489267 - 32489196
Alignment:
Q  49 taggttttcatcttcttgagggagtcttggtttggtcccctccctcttttttgtacctattctctcttttata 121  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||||| ||||||||| || |||| ||||||||    
T  32489267 taggttttcttcttcttgagggagttttggtttggttccctccctcatttttgtacttaatctc-cttttata 32489196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 15271053 - 15271110
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatct 176  Q
    ||||||||||||||| ||||||||| |||  |||||| ||||||||||||||||||||    
T  15271053 atactctctccgatcttatttataagagacatttgaagcaacaaaagttgatgtatct 15271110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 41453149 - 41453101
Alignment:
Q  160 caaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||||||||||| | ||||||||||||||||||||||||| |||||    
T  41453149 caaaagttgatgtattttgttaaaaattcagtccaaatacattaacttt 41453101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 15258790 - 15258847
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatct 176  Q
    ||||||||||||||| ||||||| |||||  ||||| ||||||||| |||||||||||    
T  15258790 atactctctccgatcttatttattaaagacgtttgagtcaacaaaaattgatgtatct 15258847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 11582647 - 11582713
Alignment:
Q  135 tatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacat 201  Q
    ||||||||||||  |||||| |||||||||||||||| |||| ||| ||||||  | ||||||||||    
T  11582647 tatttataaaagggttttgagtcaacaaaagttgatgaatctagttcaaaatttggaccaaatacat 11582713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 31150653 - 31150707
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtat 174  Q
    |||||||||||||||||||||||| ||||  |||  |||||||||||| ||||||    
T  31150653 tactctctccgatcctatttataagagaaagttgcgtcaacaaaagtttatgtat 31150707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 15243990 - 15244031
Alignment:
Q  135 tatttataaaagaattttgaatcaacaaaagttgatgtatct 176  Q
    ||||||||| |||  |||||||||||||||||||||||||||    
T  15243990 tatttataagagatatttgaatcaacaaaagttgatgtatct 15244031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 26350349 - 26350438
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  26350349 atactccctccggtcctatttataaaagaattttgaatcaataaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 26350438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 21576078 - 21575988
Alignment:
Q  118 tatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||| ||||| |||||||||||| ||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  21576078 tatactccctccggtcctatttataagagaattttggatcaacaaaagttgatgtatctaattaaaaattcagtccaaatacattcacttt 21575988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 9395481 - 9395392
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9395481 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 9395392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 13033182 - 13033093
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| |||||||||||||||||| |||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  13033182 atactccctccgatcctatttataagagaattttgggtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacattcacttt 13033093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 36563537 - 36563626
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36563537 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 36563626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 41989406 - 41989495
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41989406 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 41989495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 37148955 - 37149043
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37148955 tactccctccggtcctatttataatagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 37149043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 11795301 - 11795210
Alignment:
Q  117 ttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||| ||||  |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11795301 ttatactccctccagtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 11795210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 23360066 - 23359984
Alignment:
Q  126 ctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23360066 ctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 23359984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 13103155 - 13103066
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  13103155 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacattcacttt 13103066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 37642089 - 37641996
Alignment:
Q  115 ttttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||||| ||||| |||||||||||| |||||||||  |||| |||||||||||||||| ||||||||||||||||| |||||||||||||    
T  37642089 ttttatactccctccggtcctatttataagagaattttgggtcaataaaagttgatgtatctagttaaaaattcagtccacatacattcacttt 37641996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 17025758 - 17025666
Alignment:
Q  116 tttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| ||||||||||||||  |||||||||||||||    
T  17025758 tttatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtttaaatacattcacttt 17025666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 120 - 207
Target Start/End: Complemental strand, 583118 - 583032
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcactt 207  Q
    ||||| ||||||||||||  ||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  583118 tactccctccgatcctata-ataaaagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcactt 583032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 6126954 - 6126870
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattca 204  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  6126954 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatttagtccaaatacattca 6126870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 20848203 - 20848116
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||   |||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  20848203 tactccctccggtcctatttataagagaattttggg-caacaaaaattgatgtatctagttaaaaattcagtccaaatacattcacttt 20848116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 4444084 - 4444002
Alignment:
Q  126 ctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| || ||||||||| ||||||||  ||||||||||||||||||||||  |||||||||||||| |||||||||||||||    
T  4444084 ctccggtcttatttataagagaattttagatcaacaaaagttgatgtatctatttaaaaattcagtctaaatacattcacttt 4444002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 2366345 - 2366419
Alignment:
Q  127 tccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacat 201  Q
    |||||| |||||||||| |||| ||||  ||||||| |||| |||||| ||||||||| ||||||||||||||||    
T  2366345 tccgattctatttataagagaaatttgggtcaacaagagttcatgtatttggttaaaatttcagtccaaatacat 2366419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 966266 - 966197
Alignment:
Q  132 tcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacat 201  Q
    |||||||||||| |||| |||| |||||||||| |  |||||||||||||||||||||||| | ||||||    
T  966266 tcctatttataagagaaatttggatcaacaaaaatgaatgtatctggttaaaaattcagtcaagatacat 966197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 3549550 - 3549629
Alignment:
Q  123 tctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacatt 202  Q
    |||||||| |||||||||||| |||| |||  || |||||||||||||||||  ||||||||||| || ||| |||||||    
T  3549550 tctctccggtcctatttataagagaaatttatattaacaaaagttgatgtattcggttaaaaatttagaccagatacatt 3549629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 39290891 - 39290823
Alignment:
Q  133 cctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacat 201  Q
    ||||||||||| ||||  | ||||||||||||||| ||||||||  ||||||||| | |||||||||||    
T  39290891 cctatttataagagaaagtcgaatcaacaaaagttaatgtatctaattaaaaatttaatccaaatacat 39290823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 26395084 - 26395139
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtat 174  Q
    ||||| |||||||||||||||||||| ||  ||||| ||||||||| |||||||||    
T  26395084 atactttctccgatcctatttataaaggacatttgagtcaacaaaaattgatgtat 26395139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 36595810 - 36595856
Alignment:
Q  156 tcaacaaaagttgatgtatctggttaaaaattcagtccaaatacatt 202  Q
    ||||||||| |||||||||||| |||||||||||||| | |||||||    
T  36595810 tcaacaaaaattgatgtatctgattaaaaattcagtctagatacatt 36595856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 208
Target Start/End: Original strand, 38361750 - 38361779
Alignment:
Q  179 ttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||||||||||||||||||||||||||    
T  38361750 ttaaaaattcagtccaaatacattcacttt 38361779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 35585322 - 35585394
Alignment:
Q  136 atttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||||||||  ||||||||||||||| ||||||||| || || ||| || |||  ||||||||| |||||    
T  35585322 atttataaaagatatttgaatcaacaaaaattgatgtatttgatttaaagtttagtttaaatacattaacttt 35585394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 36523453 - 36523396
Alignment:
Q  132 tcctatttataaaagaattttgaatcaacaaaagttgatg---tatctggttaaaaatt 187  Q
    |||||||||||||| ||||| || ||||||||||||||||   ||||||||||||||||    
T  36523453 tcctatttataaaaaaatttaga-tcaacaaaagttgatgatgtatctggttaaaaatt 36523396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 8437558 - 8437467
Alignment:
Q  117 ttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||| ||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8437558 ttatactccctccggtcctatttataagagaattttgagtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 8437467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 49823377 - 49823469
Alignment:
Q  116 tttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49823377 tttatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 49823469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 10298110 - 10298021
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10298110 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 10298021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 40690995 - 40691084
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40690995 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 40691084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 19557052 - 19557140
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19557052 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 19557140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 34080030 - 34080118
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34080030 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatcttgttaaaaattcagtccaaatacattcacttt 34080118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 35513603 - 35513515
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||||||||||||||||||||||| || ||||| ||||| |||||||||| |||||||||||||||||||||||||||||||    
T  35513603 tactccctccgatcctatttataaaagaattctggatcaataaaaggtgatgtatctagttaaaaattcagtccaaatacattcacttt 35513515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 37509055 - 37508963
Alignment:
Q  116 tttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||||  ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37509055 tttatactacctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 37508963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 48340527 - 48340439
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48340527 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 48340439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 17653836 - 17653754
Alignment:
Q  126 ctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17653836 ctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 17653754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 22722063 - 22721973
Alignment:
Q  118 tatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||  |||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22722063 tatactccatccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 22721973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 51406805 - 51406715
Alignment:
Q  118 tatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||| ||||| |||||||||||| |||||||||  ||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  51406805 tatactccctccggtcctatttataagagaattttgggtcaacaaaaattgatgtatctagttaaaaattcagtccaaatacattcacttt 51406715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 8817393 - 8817474
Alignment:
Q  127 tccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8817393 tccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 8817474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 36095679 - 36095768
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| || |||||| || ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36095679 atactcactccggtcttatttacaagagaattttggatcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 36095768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 2787832 - 2787920
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2787832 tactccctccggtcctatttataagagaattttgggtcagcaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 2787920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 38964522 - 38964434
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| ||||||||   ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38964522 tactccctccggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 38964434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 42170358 - 42170434
Alignment:
Q  132 tcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||||||| |||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42170358 tcctatttataagagaattttgggtcaacaaaagttgatgtatctggttaaaaattcactccaaatacattcacttt 42170434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 33942929 - 33943020
Alignment:
Q  117 ttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||||| |||||||||||||||| ||||  |||  ||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  33942929 ttatactctcgccgatcctatttataagagaaacttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattaacttt 33943020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 46208163 - 46208072
Alignment:
Q  117 ttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||| ||||| |||||||||||| ||||||||   |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  46208163 ttatactccctccggtcctatttataagagaattttaggtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacattcacttt 46208072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 4238718 - 4238636
Alignment:
Q  126 ctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| |||||||||||| ||||||||   ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4238718 ctccggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 4238636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 9111500 - 9111582
Alignment:
Q  126 ctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  9111500 ctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacattcacttt 9111582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 42507361 - 42507443
Alignment:
Q  126 ctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| |||||||||||| |||||||||  ||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  42507361 ctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttcaaaattcagtccaaatacattcacttt 42507443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 44785410 - 44785484
Alignment:
Q  134 ctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44785410 ctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 44785484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 21295326 - 21295414
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| ||||||||   |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  21295326 tactccctccggtcctatttataagagaattttaggtcaacaaaagttgatgtatctaattaaaaattcagtccaaatacattcacttt 21295414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 6013336 - 6013424
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  |||||||||||  || ||||| |||||||||||||||||||||||||||||||    
T  6013336 tactccctccggtcctatttataagagaattttgggtcaacaaaagtaaatttatctagttaaaaattcagtccaaatacattcacttt 6013424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 9213515 - 9213574
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctgg 178  Q
    |||||| ||||| ||||||||||||||||  ||| | |||||||||||||||||||||||    
T  9213515 atactccctccggtcctatttataaaagacattttagtcaacaaaagttgatgtatctgg 9213574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 5323337 - 5323254
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggtt-aaaaattcagtccaaatacatt 202  Q
    ||||| ||||||| ||||||||||   || ||||  ||||||||||||||||||| ||||| ||||||||| | ||||||||||    
T  5323337 tactccctccgatactatttataagtaaaatttgggtcaacaaaagttgatgtatttggttaaaaaattcaattcaaatacatt 5323254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 47189003 - 47188956
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagtt 167  Q
    ||||| |||||||| ||||||||||||||| ||| |||||||||||||    
T  47189003 tactccctccgatcatatttataaaagaatgttggatcaacaaaagtt 47188956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 26019487 - 26019569
Alignment:
Q  127 tccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcactttg 209  Q
    ||||||||||||||||| ||||  ||   ||||| |||||| |||||||||||| |||||| |||| | ||||||| ||||||    
T  26019487 tccgatcctatttataagagaaaatttggtcaaccaaagtttatgtatctggttcaaaatttagtcaagatacattaactttg 26019569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 8092595 - 8092644
Alignment:
Q  127 tccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatct 176  Q
    |||| |||||||||||| ||||  |||||||||| |||||||||||||||    
T  8092595 tccggtcctatttataagagaaaattgaatcaactaaagttgatgtatct 8092644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 8092682 - 8092637
Alignment:
Q  156 tcaacaaaagttgatgtatctggttaaaaattcagtccaaatacat 201  Q
    |||||| ||||||||||||||||||||||||| |||| | ||||||    
T  8092682 tcaacagaagttgatgtatctggttaaaaatttagtcgagatacat 8092637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 8951943 - 8951984
Alignment:
Q  167 tgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||| | ||||||||||||||||||||||||| |||||    
T  8951943 tgatgtattttgttaaaaattcagtccaaatacattaacttt 8951984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 34988205 - 34988140
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaa 185  Q
    ||||| ||||| |||||||||||| | |  ||||| ||||||| ||||||||||||| ||||||||    
T  34988205 tactccctccggtcctatttataagaaatatttgagtcaacaatagttgatgtatctagttaaaaa 34988140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 9027141 - 9027209
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaatt 187  Q
    |||||| ||||| |||||||||||| | ||  |||  |||||||||||||||||||| |||||| ||||    
T  9027141 atactccctccggtcctatttataagataaagttgggtcaacaaaagttgatgtatcaggttaacaatt 9027209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 13853588 - 13853681
Alignment:
Q  115 ttttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13853588 ttttatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 13853681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 6068698 - 6068608
Alignment:
Q  118 tatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||| ||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  6068698 tatactccctccggtcctatttataagagaattttgagtcaacaaaagttgatgtatctagttaaaaattcaatccaaatacattcacttt 6068608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 6330247 - 6330157
Alignment:
Q  118 tatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6330247 tatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 6330157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 11572143 - 11572233
Alignment:
Q  118 tatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11572143 tatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 11572233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 26602454 - 26602365
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26602454 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 26602365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 2830465 - 2830377
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2830465 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 2830377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 8382969 - 8383057
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8382969 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 8383057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 8099661 - 8099572
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  8099661 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcaatccaaatacattcacttt 8099572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 9644827 - 9644742
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattca 204  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9644827 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattca 9644742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 9650844 - 9650759
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattca 204  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9650844 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattca 9650759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 35030996 - 35031089
Alignment:
Q  115 ttttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||||  ||||| |||||||||||| |||||||||  ||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  35030996 ttttatacttcctccggtcctatttataagagaattttgggtcaacaaaaattgatgtatctagttaaaaattcagtccaaatacattcacttt 35031089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 33052801 - 33052882
Alignment:
Q  127 tccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||| |||||||||||| |||||||||  |||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  33052801 tccggtcctatttataagagaattttgggtcaataaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 33052882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 8417805 - 8417881
Alignment:
Q  132 tcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  8417805 tcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcaatccaaatacattcacttt 8417881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 28747146 - 28747222
Alignment:
Q  132 tcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||||||| |||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  28747146 tcctatttataagagaattttgggtcaacaaaagttgatgtatctaattaaaaattcagtccaaatacattcacttt 28747222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 6143670 - 6143596
Alignment:
Q  134 ctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||||| |||||||||   |||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  6143670 ctatttataagagaattttgggacaacaaaagttgatgtatctagttaaaaattcaatccaaatacattcacttt 6143596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 22896594 - 22896513
Alignment:
Q  118 tatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatac 199  Q
    ||||||| | ||| |||||||||||| ||||||||   ||||||||||||||||||||| ||||||||||||||||||||||    
T  22896594 tatactcccgccggtcctatttataagagaattttttgtcaacaaaagttgatgtatctagttaaaaattcagtccaaatac 22896513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 17992106 - 17992030
Alignment:
Q  132 tcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||||||| |||||||||  ||||||||| | ||||||||| |||||||||||| ||||||||||||||||||    
T  17992106 tcctatttataagagaattttgggtcaacaaaaatcgatgtatctagttaaaaattcaatccaaatacattcacttt 17992030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 8186485 - 8186440
Alignment:
Q  132 tcctatttataaaagaattttgaatcaacaaaagttgatgtatctg 177  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||    
T  8186485 tcctatttataaaagaaatttggatcaacaaaagttgatgtatctg 8186440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 7596977 - 7597048
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagt 191  Q
    ||||| |||| ||||||||||||  |||| ||||| |||| |||||||||||||| | ||||||||||||||    
T  7596977 tactccctccaatcctatttataggagaaatttgagtcaataaaagttgatgtatttagttaaaaattcagt 7597048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 13043850 - 13043804
Alignment:
Q  158 aacaaaagttgatgtatctggttaaaaattcagtccaaatacattca 204  Q
    ||||||||||||||||||| |||||||||||| | ||||||||||||    
T  13043850 aacaaaagttgatgtatctagttaaaaattcaattcaaatacattca 13043804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 32045211 - 32045157
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtat 174  Q
    ||||| ||||||||||||||||||||||  ||| | |||||||||||| ||||||    
T  32045211 tactccctccgatcctatttataaaagatatttaactcaacaaaagttaatgtat 32045157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 3788169 - 3788093
Alignment:
Q  118 tatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtcca 194  Q
    ||||||| ||||| || ||||||||| | || |||   ||||||||||||||||||| | ||||| |||||||||||    
T  3788169 tatactccctccggtcttatttataagataaatttaggtcaacaaaagttgatgtatttagttaacaattcagtcca 3788093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 54608 - 54700
Alignment:
Q  116 tttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  54608 tttatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 54700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 2890160 - 2890250
Alignment:
Q  118 tatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2890160 tatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 2890250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 31654737 - 31654655
Alignment:
Q  126 ctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31654737 ctccggtcctatttataaaagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 31654655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 7785777 - 7785866
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7785777 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 7785866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 39571202 - 39571291
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39571202 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 39571291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 6552785 - 6552697
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6552785 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 6552697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 33289261 - 33289348
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcactt 207  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33289261 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcactt 33289348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 7012295 - 7012213
Alignment:
Q  126 ctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| |||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  7012295 ctccggtcctatttataagagaattttggatcaacaaaagttgatgtatctagttaaaaattcagtccaaatatattcacttt 7012213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 25600998 - 25601088
Alignment:
Q  118 tatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||| ||||| |||||||||||| |||||||||  |||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  25600998 tatactccctccggtcctatttataagagaattttgggtcaacaaaagttaatgtatctagttaaaaattcagtccaaatacattcacttt 25601088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 7805698 - 7805787
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7805698 atactccctccggtcctatttataagagaattttgggtcagcaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 7805787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 12763653 - 12763742
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| | |||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12763653 atactccctccggtcctatttataagataattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 12763742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 43199353 - 43199442
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| ||||||||   ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43199353 atactccctccggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 43199442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 44498186 - 44498275
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  |||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  44498186 atactccctccggtcctatttataagagaattttgggtcaataaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 44498275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 3304278 - 3304366
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| | |||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3304278 tactccctccggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 3304366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 12343146 - 12343228
Alignment:
Q  126 ctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| |||||||||||| ||||||||   ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12343146 ctccggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 12343228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 32114474 - 32114563
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| | |||||||  ||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  32114474 atactccctccggtcctatttataagaaaattttgggtcaacaaaaattgatgtatctagttaaaaattcagtccaaatacattcacttt 32114563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 204
Target Start/End: Original strand, 32211362 - 32211447
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattca 204  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  32211362 atactccctccggtcctatttataagagaattttgggtcaacaaaaattgatgtatctagttaaaaattcagtccaaatacattca 32211447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 15888366 - 15888440
Alignment:
Q  134 ctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||||| |||||||||  ||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  15888366 ctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcaatccaaatacattcacttt 15888440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 13578972 - 13578899
Alignment:
Q  135 tatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  13578972 tatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacattcacttt 13578899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 27422321 - 27422239
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacat 201  Q
    |||||| || || |||||||||||| |||| ||||  ||||||||| |  |||||||||||||||||||||||||||||||||    
T  27422321 atactcccttcggtcctatttataagagaaatttgggtcaacaaaaatgaatgtatctggttaaaaattcagtccaaatacat 27422239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 28463744 - 28463660
Alignment:
Q  117 ttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacat 201  Q
    |||||||| ||||||||||||||||   ||||| |||  ||| | ||||||||| ||||||||| ||||||||||||||||||||    
T  28463744 ttatactccctccgatcctatttattgcagaatattgggtcaccgaaagttgatatatctggttcaaaattcagtccaaatacat 28463660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 8587294 - 8587219
Alignment:
Q  126 ctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacat 201  Q
    ||||| || ||||||||| ||||  |||| |||| |||||||||||||||| |||||||||| |||| ||||||||    
T  8587294 ctccggtcttatttataagagaaacttgagtcaataaaagttgatgtatctagttaaaaatttagtcaaaatacat 8587219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 13246801 - 13246875
Alignment:
Q  127 tccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacat 201  Q
    ||||||||||||||||| |||| |||| |||||||||| |  |||||| ||  ||||||||||||||| ||||||    
T  13246801 tccgatcctatttataagagaaatttggatcaacaaaaatgaatgtatttgactaaaaattcagtccagatacat 13246875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 24691986 - 24692059
Alignment:
Q  127 tccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacat 201  Q
    |||| |||||||| |||||||| ||||  ||||||||||||||| ||||||||| |||||||||| || ||||||    
T  24691986 tccggtcctatttttaaaagaaatttgggtcaacaaaagttgatatatctggtt-aaaattcagttcagatacat 24692059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 30171483 - 30171535
Alignment:
Q  121 actctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgta 173  Q
    |||| ||||||||||||||| || |||||||||| |||||||||||| |||||    
T  30171483 actccctccgatcctatttacaagagaattttgagtcaacaaaagttaatgta 30171535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 17007026 - 17006967
Alignment:
Q  135 tatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtcca 194  Q
    ||||||||| |||| ||| | |||| ||||||||||||||||| |||| |||||||||||    
T  17007026 tatttataagagaaattttagtcaataaaagttgatgtatctgattaacaattcagtcca 17006967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 17570221 - 17570280
Alignment:
Q  135 tatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtcca 194  Q
    ||||||||| |||| ||| | |||| ||||||||||||||||| |||| |||||||||||    
T  17570221 tatttataagagaaattttagtcaataaaagttgatgtatctgattaacaattcagtcca 17570280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 17006917 - 17006969
Alignment:
Q  126 ctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctgg 178  Q
    |||||||||||||||||| ||||  |||  |||||||||||||||| ||||||    
T  17006917 ctccgatcctatttataagagaaagttgggtcaacaaaagttgatggatctgg 17006969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 17570330 - 17570278
Alignment:
Q  126 ctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctgg 178  Q
    |||||||||||||||||| ||||  |||  |||||||||||||||| ||||||    
T  17570330 ctccgatcctatttataagagaaagttgggtcaacaaaagttgatggatctgg 17570278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 115 - 207
Target Start/End: Complemental strand, 52756810 - 52756718
Alignment:
Q  115 ttttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcactt 207  Q
    |||||||||| || || ||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52756810 ttttatactcccttcggtcctatttataaaagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcactt 52756718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 24704503 - 24704412
Alignment:
Q  117 ttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||| |||||||||||||||||| |||||||||  |||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  24704503 ttatactccctccgatcctatttataagagaattttgggtcaacaaaagttaatgtatctagttaaaaattcagtccaaatacattcacttt 24704412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 5987007 - 5986918
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||||||| |||||||||||| |||||||||  ||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  5987007 atactctctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatttagttaaaaattcagtccaaatacattcacttt 5986918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 6121893 - 6121981
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6121893 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 6121981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 47833741 - 47833653
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47833741 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 47833653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 51894582 - 51894670
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51894582 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctggttaaaaattcagtccaaaaacattcacttt 51894670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 3993108 - 3993018
Alignment:
Q  118 tatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||| ||||| || ||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3993108 tatactccctccggtcttatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 3993018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 53337502 - 53337412
Alignment:
Q  118 tatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||| ||||| |||||||||||| |||||||||  |||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  53337502 tatactccctccggtcctatttataagagaattttgggtcaataaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 53337412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 33621927 - 33621838
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| | |||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33621927 atactccctccggtcctatttataagataattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 33621838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 47838616 - 47838705
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| ||||||||   ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47838616 atactccctccggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 47838705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 48336394 - 48336305
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| | |||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48336394 atactccctccggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 48336305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 3372251 - 3372163
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| | |||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3372251 tactccctccggtcctatttataagataattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 3372163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 20538686 - 20538774
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  20538686 tactccctccggtcctatttataagagaattttgggtcaacaaaatttgatgtatctagttaaaaattcagtccaaatacattcacttt 20538774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 42797862 - 42797774
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| ||||||||   ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42797862 tactccctccggtcctatttataagagaattttaggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 42797774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 46797855 - 46797767
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  46797855 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatatatctagttaaaaattcagtccaaatacattcacttt 46797767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 3422191 - 3422101
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcactttg 209  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||| |||||||||||| ||||    
T  3422191 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacattcattttg 3422101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 3904681 - 3904771
Alignment:
Q  118 tatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||| ||||| |||||||||||| |||||||||  ||||||||| ||||||||| | |||||||||||||||||||||||||||||||    
T  3904681 tatactccctccggtcctatttataagagaattttgggtcaacaaaaattgatgtatttagttaaaaattcagtccaaatacattcacttt 3904771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 41469765 - 41469854
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| ||||||||   |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  41469765 atactccctccggtcctatttataagagaatttttggtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacattcacttt 41469854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 40913190 - 40913277
Alignment:
Q  121 actctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||| ||||| |||||||||||| |||| |||| |||||||||||||||| ||||  |||||||||||||||||||||||||||||||    
T  40913190 actccctccggtcctatttataagagaaatttggatcaacaaaagttgatatatccagttaaaaattcagtccaaatacattcacttt 40913277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 7579426 - 7579352
Alignment:
Q  134 ctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||||| |||||||||  ||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  7579426 ctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcaatccaaatacattcacttt 7579352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 43900673 - 43900591
Alignment:
Q  126 ctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| |||||||||||| |||||||||  | ||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  43900673 ctccggtcctatttataagagaattttgggttaacaaaagttgatgtatctagttaaaaattcagtccaaatacatttacttt 43900591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 41615683 - 41615764
Alignment:
Q  127 tccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||| |||||||||||| ||||  ||| |||||||||||||||||||| | |||||||||| |||||||||||||| |||||    
T  41615683 tccggtcctatttataagagaaaattggatcaacaaaagttgatgtatttagttaaaaattaagtccaaatacattaacttt 41615764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 17344344 - 17344262
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacat 201  Q
    |||||| |||| ||| ||||||||| |||| |||| ||||||||||||||||||||| | ||||||||||||| || ||||||    
T  17344344 atactccctccaatcttatttataagagaaatttggatcaacaaaagttgatgtatccgattaaaaattcagttcagatacat 17344262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 33551292 - 33551243
Alignment:
Q  159 acaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  33551292 acaaaagttgatgtatctagttaaaaattcagtcaaaatacattcacttt 33551243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 25855174 - 25855125
Alignment:
Q  159 acaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||| ||||||| ||||||||||||||||||||||||||| |||||    
T  25855174 acaaaagtcgatgtatttggttaaaaattcagtccaaatacattaacttt 25855125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 26231668 - 26231619
Alignment:
Q  159 acaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  26231668 acaaaagttgatatatctagttaaaaattcagtccaaatacattcgcttt 26231619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 45478216 - 45478151
Alignment:
Q  126 ctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagt 191  Q
    |||||||||||||||||| |||| | ||  |||| ||||||||||||||| |||||||||||||||    
T  45478216 ctccgatcctatttataagagaaatgtgggtcaataaaagttgatgtatccggttaaaaattcagt 45478151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 50430454 - 50430499
Alignment:
Q  156 tcaacaaaagttgatgtatctggttaaaaattcagtccaaatacat 201  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||    
T  50430454 tcaacaaaaattgatgtatctggttaaaaattcaatccaaatacat 50430499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 13601075 - 13601128
Alignment:
Q  134 ctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaatt 187  Q
    |||||||||||||| ||||  ||||||||||||| |||||||||||| ||||||    
T  13601075 ctatttataaaagacttttagatcaacaaaagtttatgtatctggtttaaaatt 13601128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 4780425 - 4780358
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaatt 187  Q
    ||||| ||||| |||||||||||| |||| |||   |||||||||||| ||||||||| |||||||||    
T  4780425 tactccctccggtcctatttataagagaaattttggtcaacaaaagttaatgtatctgattaaaaatt 4780358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 17236919 - 17236864
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtat 174  Q
    |||||||||||| |||||||||||| | || ||||  |||||||||||||||||||    
T  17236919 atactctctccggtcctatttataagaaaaatttgggtcaacaaaagttgatgtat 17236864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 17344212 - 17344270
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctg 177  Q
    |||||| ||||| | |||||||||| ||||  || ||||||||||||||||||||||||    
T  17344212 atactcgctccggttctatttataagagaaagttaaatcaacaaaagttgatgtatctg 17344270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 1716425 - 1716365
Alignment:
Q  124 ctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaa 184  Q
    ||||| |||||||||||||| |||| |||   ||||| |||||||||| ||||||||||||    
T  1716425 ctctctgatcctatttataagagaagtttaggtcaaccaaagttgatgcatctggttaaaa 1716365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 26471065 - 26471153
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26471065 tactccctccggtcctatttataagagaattttggatcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 26471153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 14984968 - 14984879
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14984968 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 14984879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 47216694 - 47216787
Alignment:
Q  115 ttttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||||| ||||| | |||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47216694 ttttatactccctccggtactatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 47216787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 27159358 - 27159446
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27159358 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 27159446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 31842795 - 31842883
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31842795 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 31842883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 39401966 - 39402054
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39401966 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 39402054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 44668093 - 44668181
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44668093 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 44668181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 9981771 - 9981689
Alignment:
Q  126 ctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9981771 ctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 9981689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 25694451 - 25694361
Alignment:
Q  118 tatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  25694451 tatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcaatccaaatacattcacttt 25694361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 47969826 - 47969737
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| |||||    
T  47969826 atactccctccggtcctatttataaaataattttggatcaacaaaagttgatgtatctagttaaaaattcagtctaaatacatttacttt 47969737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 11796063 - 11795975
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  11796063 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatgcattcacttt 11795975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 47777481 - 47777569
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  47777481 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttcaaaattcagtccaaatacattcacttt 47777569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 44955212 - 44955294
Alignment:
Q  126 ctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| |||||||||||| ||||||||   ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44955212 ctccggtcctatttataagagaattttaggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 44955294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 1051019 - 1050930
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||||| ||||||||||||||| |||||||||||||||||||| ||||||||||    
T  1051019 atactccctccggtcctatttataagagaattttgggtcaactaaagttgatgtatctagttaaaaattcagtccaaatgcattcacttt 1050930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 34042827 - 34042742
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattca 204  Q
    |||||| ||||| | |||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34042827 atactccctccggttctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattca 34042742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 12483627 - 12483716
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||| | ||| ||||||||||| |||||||||||||||    
T  12483627 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatttagttcaaaattcagtctaaatacattcacttt 12483716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 47588352 - 47588425
Alignment:
Q  135 tatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||||| |||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  47588352 tatttataagagaattttgggtcaacaaaagttgatgtatctaattaaaaattcagtccaaatacattcacttt 47588425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 11989920 - 11989833
Alignment:
Q  111 tctcttttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaata 198  Q
    |||||||  ||||| ||||| ||||||||||||||||| ||||| |||| |||| ||||||||| |||||||||||||||||||||||    
T  11989920 tctctttattactccctccggtcctatttataaaagaaatttgagtcaataaaaattgatgtatttggttaaaaattcagtccaaata 11989833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 17556884 - 17556801
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacatt 202  Q
    |||||| ||||| |||||||||||| ||||  |||  ||||||||||||||||||||| |||||||||||||||||||||||||    
T  17556884 atactccctccggtcctatttataagagaaacttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacatt 17556801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 23278021 - 23278085
Alignment:
Q  140 ataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattca 204  Q
    |||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23278021 ataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattca 23278085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 11897185 - 11897103
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacat 201  Q
    |||||| ||||| |||||||||||| |||| ||||  |||||||||||||||||||| ||||||||||||||| || ||||||    
T  11897185 atactccctccggtcctatttataagagaaatttgggtcaacaaaagttgatgtatccggttaaaaattcagttcagatacat 11897103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 41341651 - 41341756
Alignment:
Q  1 gtttgctatggaatcttttgtgaagaacaaaattggtttatcttccaataggttttcatcttcttgagggagtcttggtttggtcccctccctctttttt 100  Q
    ||||||||  |||| |||||| |||||||| ||||||||| ||    ||| ||||||  |||||||||||||| ||| ||||||||||||||||| ||||    
T  41341651 gtttgctagagaatattttgttaagaacaagattggtttacctaattataagttttctgcttcttgagggagttttgctttggtcccctccctctatttt 41341750  T
Q  101 gtacct 106  Q
    ||||||    
T  41341751 gtacct 41341756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 37552274 - 37552190
Alignment:
Q  117 ttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacat 201  Q
    |||||||| | ||| |||||||||||| |||| ||||  ||||||||| |  |||||||||||||||||||||||||| ||||||    
T  37552274 ttatactccccccggtcctatttataagagaaatttgggtcaacaaaaatgaatgtatctggttaaaaattcagtccagatacat 37552190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 21538000 - 21537942
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctg 177  Q
    ||||||||||||||| ||||||||| ||||  |||| ||||||||||||||||||||||    
T  21538000 atactctctccgatcttatttataagagaaaattgagtcaacaaaagttgatgtatctg 21537942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 16448243 - 16448180
Alignment:
Q  115 ttttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctgg 178  Q
    |||||||||| ||||| |||||||||||| ||||  |||  |||||||||||||||||||||||    
T  16448243 ttttatactccctccggtcctatttataagagaaagttgggtcaacaaaagttgatgtatctgg 16448180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 1598389 - 1598461
Alignment:
Q  127 tccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacat 201  Q
    ||||||||||||||||| |||| | ||  ||||||||| ||||||||| || |||||||||||||||||||||||    
T  1598389 tccgatcctatttataagagaaatatgg-tcaacaaaaattgatgtatatg-ttaaaaattcagtccaaatacat 1598461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 16448144 - 16448189
Alignment:
Q  156 tcaacaaaagttgatgtatctggttaaaaattcagtccaaatacat 201  Q
    |||||||||||| |||||||||||| ||||||||||||| ||||||    
T  16448144 tcaacaaaagtttatgtatctggttcaaaattcagtccagatacat 16448189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 11025503 - 11025558
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatc 175  Q
    ||||||||| ||| ||||||||||||||  |||| ||||||||||| |||||||||    
T  11025503 tactctctctgattctatttataaaagacctttggatcaacaaaagatgatgtatc 11025558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 12062677 - 12062622
Alignment:
Q  132 tcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaatt 187  Q
    |||||||||||| |||| ||| ||||||||||| || ||||||||| |||||||||    
T  12062677 tcctatttataagagaaatttaaatcaacaaaaattaatgtatctgattaaaaatt 12062622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 12062572 - 12062617
Alignment:
Q  132 tcctatttataaaaga-attttgaatcaacaaaagttgatgtatctg 177  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||    
T  12062572 tcctatttataaaagatattttg-atcaacaaaagttgatgtatctg 12062617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 17167826 - 17167768
Alignment:
Q  127 tccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaa 185  Q
    ||||||| |||||| ||||||| ||||| |||||||||||| ||||||||  |||||||    
T  17167826 tccgatcttatttacaaaagaaatttgagtcaacaaaagttaatgtatctaattaaaaa 17167768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 12043613 - 12043658
Alignment:
Q  129 cgatcctatttataaaagaattttgaatcaacaaaagttgatgtat 174  Q
    |||||||||||||||||||  ||| | |||||||||||||||||||    
T  12043613 cgatcctatttataaaagatatttaagtcaacaaaagttgatgtat 12043658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 29855082 - 29855115
Alignment:
Q  154 aatcaacaaaagttgatgtatctggttaaaaatt 187  Q
    ||||||||||||||||||||| ||||||||||||    
T  29855082 aatcaacaaaagttgatgtatttggttaaaaatt 29855115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 12043726 - 12043666
Alignment:
Q  127 tccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaatt 187  Q
    |||| |||||||||||| | || ||| ||||||||||| || |||||||| ||||||||||    
T  12043726 tccggtcctatttataagaaaaatttaaatcaacaaaaattaatgtatcttgttaaaaatt 12043666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 12069575 - 12069535
Alignment:
Q  161 aaaagttgatgtatctggttaaaaattcagtccaaatacat 201  Q
    |||||||||| |||| |||||||||||||||| ||||||||    
T  12069575 aaaagttgatttatcaggttaaaaattcagtctaaatacat 12069535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 44953062 - 44953122
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggt 179  Q
    |||||||||| ||| |||||||||| | |  ||||| |||| |||||||||||||||||||    
T  44953062 atactctctctgattctatttataagaaacatttgagtcaataaaagttgatgtatctggt 44953122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 9268888 - 9268798
Alignment:
Q  118 tatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9268888 tatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 9268798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 1738446 - 1738535
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1738446 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 1738535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 7240880 - 7240791
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7240880 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 7240791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 36583526 - 36583437
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| |||||||||||||||||| |||||||||  ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  36583526 atactccctccgatcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattaagtccaaatacattcacttt 36583437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 94318 - 94406
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| |||||||||||||||||| |||||||||  ||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  94318 tactccctccgatcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattctgtccaaatacattcacttt 94406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 46840990 - 46840902
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46840990 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 46840902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 7482356 - 7482267
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  7482356 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacattcacttt 7482267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 28536750 - 28536839
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| ||||||||| ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  28536750 atactccctccggtcctatttataagagaattttggatcaataaaagttgatgtatctagttaaaaattcattccaaatacattcacttt 28536839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 38063912 - 38064001
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||| | |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38063912 atactccctctggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 38064001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 22285829 - 22285741
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  22285829 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacattcacttt 22285741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 23314139 - 23314227
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  23314139 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatatatctagttaaaaattcagtccaaatacattcacttt 23314227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 31319399 - 31319487
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| | |||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31319399 tactccctccggttctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 31319487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 1565726 - 1565817
Alignment:
Q  117 ttatactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||| || || | |||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1565726 ttatactcccttcggttctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 1565817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 33418500 - 33418418
Alignment:
Q  126 ctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| |||||||||||| |||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  33418500 ctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacattcacttt 33418418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 38441584 - 38441502
Alignment:
Q  126 ctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  38441584 ctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacattcacttt 38441502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 36016208 - 36016284
Alignment:
Q  132 tcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||||||| |||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  36016208 tcctatttataagagaattttgggtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacattcacttt 36016284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 4790372 - 4790294
Alignment:
Q  126 ctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattca 204  Q
    ||||| |||||||||||| |||||||||  |||| |||||||||||||||| |||||||||| ||||||||||||||||    
T  4790372 ctccggtcctatttataagagaattttgggtcaataaaagttgatgtatctagttaaaaatttagtccaaatacattca 4790294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 40840126 - 40840201
Alignment:
Q  127 tccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacatt 202  Q
    |||| |||||||||||| |||| |||   ||||||||||||||||||  | |||||||||||||||||||||||||    
T  40840126 tccggtcctatttataagagaaatttttgtcaacaaaagttgatgtacttagttaaaaattcagtccaaatacatt 40840201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 9636171 - 9636118
Alignment:
Q  134 ctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaatt 187  Q
    |||||||||||||| ||||  ||||||||||||| |||||||||||| ||||||    
T  9636171 ctatttataaaagacttttagatcaacaaaagtttatgtatctggtttaaaatt 9636118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 7269412 - 7269476
Alignment:
Q  127 tccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagt 191  Q
    |||| |||||||||||| ||||  |||  | |||||||||||||| |||||||||||||||||||    
T  7269412 tccggtcctatttataagagaaagttgggttaacaaaagttgatgcatctggttaaaaattcagt 7269476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 9575503 - 9575451
Alignment:
Q  156 tcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||||||| ||||||||||| ||||||||||||||| |||||| || |||||    
T  9575503 tcaacaaaacttgatgtatctagttaaaaattcagtctaaatacgttaacttt 9575451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 12991 - 12902
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| |||||||||  ||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12991 atactccctccggtcctatttataagagaattttgggtcagcaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 12902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 23916 - 23827
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| | |||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23916 atactccctccggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 23827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1707 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold1707
Description:

Target: scaffold1707; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 1453 - 1377
Alignment:
Q  132 tcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1453 tcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttt 1377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 49635 - 49547
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  49635 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatttagttaaaaattcagtccaaatacattcacttt 49547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 6130 - 6219
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacattcacttt 208  Q
    |||||| ||||| |||||||||||| | |||||||  ||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  6130 atactccctccggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccacatacattcacttt 6219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 21 - 66
Alignment:
Q  156 tcaacaaaagttgatgtatctggttaaaaattcagtccaaatacat 201  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||    
T  21 tcaacaaaagttgatgtatttggttaaaaatttagtccaaatacat 66  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 53339 - 53408
Alignment:
Q  118 tatactctctccgatcctatttataaaagaat-tttgaatcaacaaaagttgatgtatctggttaaaaatt 187  Q
    |||||||  ||||||| ||||||||||||||  |||| || ||||||||||||||||||| ||||||||||    
T  53339 tatactccatccgatcttatttataaaagaaagtttggat-aacaaaagttgatgtatctcgttaaaaatt 53408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 231302 - 231384
Alignment:
Q  119 atactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctggttaaaaattcagtccaaatacat 201  Q
    |||||| ||||| |||||||||||  ||||| ||   ||||||||||||||| || || ||| ||||||||||||| ||||||    
T  231302 atactccctccggtcctatttataggagaatattaggtcaacaaaagttgatatacctagttcaaaattcagtccagatacat 231384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 231433 - 231375
Alignment:
Q  120 tactctctccgatcctatttataaaagaattttgaatcaacaaaagttgatgtatctgg 178  Q
    ||||| ||||||||||| |||||| ||||  ||| ||||||||||||| ||||||||||    
T  231433 tactccctccgatcctaattataagagaaagttggatcaacaaaagtttatgtatctgg 231375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University