View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15113_low_2 (Length: 576)

Name: NF15113_low_2
Description: NF15113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15113_low_2
NF15113_low_2
[»] chr2 (5 HSPs)
chr2 (80-283)||(28843751-28843952)
chr2 (447-562)||(28845677-28845792)
chr2 (284-404)||(28844251-28844370)
chr2 (396-445)||(28844395-28844444)
chr2 (18-70)||(28843664-28843714)
[»] chr4 (3 HSPs)
chr4 (90-142)||(54242716-54242768)
chr4 (86-132)||(41130-41176)
chr4 (89-117)||(41684782-41684810)
[»] chr5 (3 HSPs)
chr5 (86-137)||(421787-421838)
chr5 (86-117)||(37160718-37160749)
chr5 (86-116)||(24127325-24127355)
[»] chr3 (2 HSPs)
chr3 (22-63)||(49977940-49977981)
chr3 (89-145)||(40482203-40482259)
[»] chr6 (1 HSPs)
chr6 (87-151)||(26394264-26394328)
[»] chr8 (1 HSPs)
chr8 (86-139)||(33726456-33726509)
[»] chr7 (1 HSPs)
chr7 (86-142)||(20228646-20228702)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 3e-80; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 80 - 283
Target Start/End: Original strand, 28843751 - 28843952
Alignment:
Q  80 tttttattagttgattttaatagtttagagactaaattgatgagaaagtgataatttaaaaacaaaattgatcgattattcaaataaaatggaacaagtt 179  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  28843751 tttttgttagttgattttaataatttagagactaaattgatgagaa-gtgataatttaagaacaaaattgatcatttattcaaataaaatggaacaagtt 28843849  T
Q  180 ttatgtagttctagaaggaagcatctcaatatagcatctggtccacataatagactcatggaccaaagctctaatcactatttattggaccaaacataac 279  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||    
T  28843850 ttatgta-ttctagaaggaagcatctcaatatagtatctggtccacataatagactcacggaccaaagctctaatcactagttattggatcaaacataac 28843948  T
Q  280 tatt 283  Q
    ||||    
T  28843949 tatt 28843952  T

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Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 447 - 562
Target Start/End: Original strand, 28845677 - 28845792
Alignment:
Q  447 ttggtgttaagggatttcggaatttattttt-aactccacaaacttagagtaagtagtaaaatctcaagtgtaatctatttgcagcaagattcaatacaa 545  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  28845677 ttggtgttaagggatttcggaatttattttttaactccataaacttatagtaagtagtaaa-tctcaagtgaaatctatttgcagcaagattcaatacaa 28845775  T
Q  546 ctttgaaaattaataat 562  Q
    ||||||||| |||||||    
T  28845776 ctttgaaaagtaataat 28845792  T

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Target: chr2; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 284 - 404
Target Start/End: Original strand, 28844251 - 28844370
Alignment:
Q  284 tatgctcttattgaaaggttaacaaaagttctattatgattccaaaatctcattcgtgaactacctagctaggagtggtaatgactatgtcaaaaagttg 383  Q
    |||| |||||||||||| |||||||| ||||||||||||||  ||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  28844251 tatgttcttattgaaagattaacaaa-gttctattatgattaaaaaatctcattcgtgaactaccttgctcggagtggtaatgactatgtcataaagttg 28844349  T
Q  384 ctgctcaaggttagtgaccct 404  Q
    |||||||||||| ||||||||    
T  28844350 ctgctcaaggtttgtgaccct 28844370  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 396 - 445
Target Start/End: Original strand, 28844395 - 28844444
Alignment:
Q  396 agtgaccctaaatcactaatggccaacaagatttcatcttcaatatttag 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28844395 agtgaccctaaatcactaatggccaacaagatttcatcttcaatatttag 28844444  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 28843664 - 28843714
Alignment:
Q  18 tttggttgattttcatgatagtttaatgaccaaaatgatgtattttctaccgt 70  Q
    |||||||||||||||||||||  |||| |||||||||||| ||||||||||||    
T  28843664 tttggttgattttcatgatag--taataaccaaaatgatgcattttctaccgt 28843714  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 54242716 - 54242768
Alignment:
Q  90 ttgattttaatagtttagagactaaattgatgagaaagtgataatttaaaaac 142  Q
    ||||||||| ||||||| ||||||||||||||||||||||||| ||| |||||    
T  54242716 ttgattttattagtttaaagactaaattgatgagaaagtgatagtttgaaaac 54242768  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 41130 - 41176
Alignment:
Q  86 ttagttgattttaatagtttagagactaaattgatgagaaagtgata 132  Q
    |||||||||||||| ||||||||||||||||||| || ||| |||||    
T  41130 ttagttgattttaacagtttagagactaaattgacgaaaaattgata 41176  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 41684810 - 41684782
Alignment:
Q  89 gttgattttaatagtttagagactaaatt 117  Q
    |||||||||||||||||||||||||||||    
T  41684810 gttgattttaatagtttagagactaaatt 41684782  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 421787 - 421838
Alignment:
Q  86 ttagttgattttaatagtttagagactaaattgatgagaaagtgataattta 137  Q
    |||||||||||||||||||||| |||||||||| ||||| ||||||| ||||    
T  421787 ttagttgattttaatagtttagggactaaattggtgagagagtgatagttta 421838  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 117
Target Start/End: Original strand, 37160718 - 37160749
Alignment:
Q  86 ttagttgattttaatagtttagagactaaatt 117  Q
    ||||||||||||||||||||||||||||||||    
T  37160718 ttagttgattttaatagtttagagactaaatt 37160749  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 116
Target Start/End: Original strand, 24127325 - 24127355
Alignment:
Q  86 ttagttgattttaatagtttagagactaaat 116  Q
    |||||||||||||||||||||||||||||||    
T  24127325 ttagttgattttaatagtttagagactaaat 24127355  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 49977940 - 49977981
Alignment:
Q  22 gttgattttcatgatagtttaatgaccaaaatgatgtatttt 63  Q
    |||||||||||||||||||||||||| ||| |||||||||||    
T  49977940 gttgattttcatgatagtttaatgactaaattgatgtatttt 49977981  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 40482259 - 40482203
Alignment:
Q  89 gttgattttaatagtttagagactaaattgatgagaaagtgataatttaaaaacaaa 145  Q
    |||||||||| |||||||| || ||||||||||| || |||||| |||||| |||||    
T  40482259 gttgattttattagtttagggattaaattgatgaaaatgtgatagtttaaagacaaa 40482203  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 151
Target Start/End: Original strand, 26394264 - 26394328
Alignment:
Q  87 tagttgattttaatagtttagagactaaattgatgagaaagtgataatttaaaaacaaaattgat 151  Q
    ||||||||||||||| | ||  |||||||||||||||| |||| |||||||||||| ||| ||||    
T  26394264 tagttgattttaataatctaaggactaaattgatgagagagtggtaatttaaaaactaaactgat 26394328  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 33726509 - 33726456
Alignment:
Q  86 ttagttgattttaatagtttagagactaaattgatgagaaagtgataatttaaa 139  Q
    |||||| ||||||||||||||  |||||||||| ||||| ||||||| ||||||    
T  33726509 ttagtttattttaatagtttaatgactaaattggtgagagagtgatagtttaaa 33726456  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 20228702 - 20228646
Alignment:
Q  86 ttagttgattttaatagtttagagactaaattgatgagaaagtgataatttaaaaac 142  Q
    ||||||||||||||||||||||||| ||||||  ||| |||| |||  |||||||||    
T  20228702 ttagttgattttaatagtttagagattaaattagtgataaagggattgtttaaaaac 20228646  T

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