View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15113_low_3 (Length: 457)
Name: NF15113_low_3
Description: NF15113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15113_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Complemental strand, 31577161 - 31576741
Alignment:
| Q |
17 |
aatatatatgttggtgaggataccattagttaatagtaggctgcaagaatcaaataacagtaccatactattacgtccaagaaaataatattaaatagca |
116 |
Q |
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| T |
31577161 |
aatatatatgttggtgaagatacaattagttaatagtaggctgcaagaatcaaataacagtaccatactattacgtccaagaaaataatatcaaatagca |
31577062 |
T |
|
| Q |
117 |
gtatcatcgtcgccttatacagtgagaaatagtttagtttctagtatataatattttatataccttaccatacacagaataaaacagaattcatgattaa |
216 |
Q |
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| T |
31577061 |
gtatcatcgtcgccttatacagtgagaaatagtttagtttctagtatataatattttatataccttaccatacacagaataaaacagaattcatgattaa |
31576962 |
T |
|
| Q |
217 |
tggtataatacatatacattttcatatnnnnnnnntgcattgctcaaaagacaaaaatacagcatgtgatcacatgctaacgacctttcggttccaccat |
316 |
Q |
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| T |
31576961 |
tggtataatacatatacattttcatataaaaaaaatgcattgctcaaaagacaaaaatacagcatgtgatcacatgctaacgacctttcggttccaccat |
31576862 |
T |
|
| Q |
317 |
acccgcttgattagttgattggcagaaatattgtaatcacctactctctgaccctctcaatgaaacatattgattgaaatctatacattatagtattata |
416 |
Q |
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| T |
31576861 |
acccgcttgattagttgattggcagaaatattgtaatcacctactctctgaccctctcaatgaaacatattgattgaaatcaatacattatagtattata |
31576762 |
T |
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| Q |
417 |
ctataataatgctcctacggt |
437 |
Q |
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| T |
31576761 |
ctataataatgctcctacggt |
31576741 |
T |
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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 28426652 - 28426502
Alignment:
| Q |
14 |
aagaatatatatgttggtgaggataccattagttaatagtaggctgcaagaatcaaataacagtaccatactatta--------cgtccaagaaaataat |
105 |
Q |
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|||||| |||||||||||||| ||| ||| |||||||||||||| |||||||| ||| |||||| ||||||||| |||||||||||||||| |
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| T |
28426652 |
aagaatttatatgttggtgagaataaaattgattaatagtaggctgaaagaatcatatagcagtactatactattagtctattacgtccaagaaaataat |
28426553 |
T |
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| Q |
106 |
attaaatagcagtatcatcgtcgccttatacagtgagaaatagtttagtttcta |
159 |
Q |
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| T |
28426552 |
atcaaatatcagtatcatcatcgccttaca---tgagaaatagtttagtttcta |
28426502 |
T |
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