View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15113_low_4 (Length: 439)
Name: NF15113_low_4
Description: NF15113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15113_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 12 - 419
Target Start/End: Complemental strand, 46112959 - 46112551
Alignment:
| Q |
12 |
atgaactcaaatgttttggtatagtgataaaagaaagaggcattggatcatgtattgtggtcttgctaatgtttttgtattaagataaatgtatatctct |
111 |
Q |
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| T |
46112959 |
atgaactcaaatgttttggtatagtgataaaagaaagaggcattggatcatatattgtggtcttgctaatgtttttgtattaagataaatgtatatctct |
46112860 |
T |
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| Q |
112 |
tggtcaatgttgtcaaaa-ttttaaggtctttcctatataagattgaggcatagtccacttgctctaaatttttcgtataaataaaaatgagtggtgttt |
210 |
Q |
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| T |
46112859 |
tggtcaatgttgtcaaaaattttaaggtctttcctatataagattgaggtatagtccacttgctctaaatttttcgtataaataaaaatgagtggtgttt |
46112760 |
T |
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| Q |
211 |
gatatgcatacttttttaatgcaggttttaggaatcacgttttcatgaaagtgtttgctatatctttgaaaatgcaataaaatttctgaaaatattagat |
310 |
Q |
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| T |
46112759 |
gatatgcatacttttttaatgcaggttttaggaatcacgttttcatgaaagtgtttgctatatctttgaaaatgcaataaaatttctgaaaatattagat |
46112660 |
T |
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| Q |
311 |
aatatttttaacggaatttcattattgtaacaggaatagttgattcaatagatgatgaaccaaagtgcattttgtacgaaagatgtgctggttttggtgg |
410 |
Q |
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| T |
46112659 |
aatatttttaacggaatttcattattgtaacaggaatagttgattcaatagatgatgaaccaaagtgctttttgtatgaatgatgtgctggtggtggtgg |
46112560 |
T |
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| Q |
411 |
ttcaccatt |
419 |
Q |
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| T |
46112559 |
ttcaccatt |
46112551 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 385
Target Start/End: Complemental strand, 17449129 - 17449052
Alignment:
| Q |
305 |
ttagataatatttttaacggaatttcattattgtaacaggaatagttgattcaatagatgatgaaccaaagtgcattttgt |
385 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||| ||| ||| ||||| | || ||||||| |||||| |
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| T |
17449129 |
ttagataatatttttaacggagtttc---attgtaacaggaatagtcgatccaacagatgctacacgaaagtgctttttgt |
17449052 |
T |
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