View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15113_low_5 (Length: 342)

Name: NF15113_low_5
Description: NF15113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15113_low_5
NF15113_low_5
[»] chr5 (17 HSPs)
chr5 (16-333)||(40408954-40409271)
chr5 (16-239)||(40406339-40406562)
chr5 (16-321)||(40457281-40457586)
chr5 (44-233)||(40362312-40362501)
chr5 (39-210)||(40326404-40326575)
chr5 (66-196)||(40363351-40363481)
chr5 (39-230)||(40283456-40283647)
chr5 (32-242)||(40256888-40257098)
chr5 (44-209)||(40311125-40311290)
chr5 (16-62)||(40388436-40388482)
chr5 (185-228)||(40333957-40334000)
chr5 (185-228)||(40387235-40387278)
chr5 (16-74)||(40277990-40278048)
chr5 (16-157)||(40377061-40377202)
chr5 (124-224)||(40303504-40303604)
chr5 (16-87)||(40334098-40334169)
chr5 (16-87)||(40387376-40387447)


Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 40409271 - 40408954
Alignment:
Q  16 atcaagacaccacgtggaatatccaaagttttcagacaaaacaacaactgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggttt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40409271 atcaagacaccatgtggaatatccaaagttttcagacaaaacaacaattgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggttt 40409172  T
Q  116 ccacccttcaatccctcatcatccatgaagattttgaatccctcacgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatcttccccgc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40409171 ccacccttcaatccctcatcatccatgaagattttgaatccctcatgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatcttccccgc 40409072  T
Q  216 aaaaactgagaaaaacatcgtagcgaggcagtgattgtaccgttgactccacaatcttctcgaagagttcatattcgaacctatggatacacagatcatt 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||    
T  40409071 aaaaactgagaaaaacatcgtagcgaggcagtgattgtaccgttgactccacaatcttcttgaagagttcatattcgaacctatgaatgcacagatcatt 40408972  T
Q  316 ttaattcatatagtctat 333  Q
    |||||||||| |||||||    
T  40408971 ttaattcataaagtctat 40408954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 40406562 - 40406339
Alignment:
Q  16 atcaagacaccacgtggaatatccaaagttttcagacaaaacaacaactgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | |||||||||||||||||||    
T  40406562 atcaagacaccacgtggaatatccaaagttttcagacaaaacaacaattgaaagccttgatttttcaattgcttcgagaagagtttgtgaaatttggttt 40406463  T
Q  116 ccacccttcaatccctcatcatccatgaagattttgaatccctcacgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatcttccccgc 215  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||  || |||| |||| ||||||||||||||||| ||||||||||||||||||||||    
T  40406462 ccaccctccaatccctcatcatccatgaagatcttgaatccctcattactcaaagcatggtagagaaatcctgtaaaggagtagcgagtatcttccccgc 40406363  T
Q  216 aaaaactgagaaaaacatcgtagc 239  Q
    ||||||||||||||||||| ||||    
T  40406362 aaaaactgagaaaaacatcatagc 40406339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 40457281 - 40457586
Alignment:
Q  16 atcaagacaccacgtggaatatccaaagttttcagacaaaacaacaactgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggttt 115  Q
    |||||||||||| || ||||||||| | ||||| ||||||||||||| ||| ||||||||||||||||||||||| |  | |||||||||||||||||||    
T  40457281 atcaagacaccatgtcgaatatccataattttcggacaaaacaacaattgagagccttgatttttcaattgcttttaaaagagtttgtgaaatttggttt 40457380  T
Q  116 ccacccttcaatccctcatcatccatgaagattttgaatccctcacgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatcttccccgc 215  Q
    ||||||| |||||||||||||||||||||||| |||||||||||  |||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||    
T  40457381 ccaccctccaatccctcatcatccatgaagatcttgaatccctctagacgcaaagcatgatagaggaatcccgtaaaggagtagcgagtatcttccccgc 40457480  T
Q  216 aaaaactgagaaaaacatcgtagcgaggcagtgattgtaccgttgactccacaatcttctcgaagagttcatattcgaacctatggatacacagatcatt 315  Q
    ||||||| ||||||||||||||||| || || |||||||| ||| ||||||||||||| | || ||||||||||||||| ||||| || || | ||| ||    
T  40457481 aaaaacttagaaaaacatcgtagcggggtagcgattgtactgttaactccacaatcttttggatgagttcatattcgaatctatgaatgcaaaaatcctt 40457580  T
Q  316 ttaatt 321  Q
    ||||||    
T  40457581 ttaatt 40457586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 44 - 233
Target Start/End: Complemental strand, 40362501 - 40362312
Alignment:
Q  44 ttttcagacaaaacaacaactgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggtttccacccttcaatccctcatcatccatga 143  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  40362501 ttttcagacaaaacaacaattgaaagccttgatttttcaattgctttgagtagagtttgtgaaatttggtttccaccctccaatccctcatcatccatga 40362402  T
Q  144 agattttgaatccctcacgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatcttccccgcaaaaactgagaaaaacat 233  Q
    |||| |||||||||||||||| |||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  40362401 agatcttgaatccctcacgacacaaagcatgatagaggaatcccgtaaaggagtagcgagtatcttccccgcaaaaacttagaaaaacat 40362312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 210
Target Start/End: Complemental strand, 40326575 - 40326404
Alignment:
Q  39 caaagttttcagacaaaacaacaactgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggtttccacccttcaatccctcatcatc 138  Q
    ||||||||||||| |||||||||| ||||| |||||||   ||||||||||||| || || |  ||||||||  || |||||||||||| ||||||||||    
T  40326575 caaagttttcagagaaaacaacaattgaaatccttgatgcctcaattgctttgattagagatgatgaaatttcattcccacccttcaattcctcatcatc 40326476  T
Q  139 catgaagattttgaatccctcacgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatcttc 210  Q
    ||||||| | ||||| ||||| |||| || |  || ||||||||| ||||| ||||||||||||||||||||    
T  40326475 catgaaggtcttgaacccctctcgacacagaatattatagagaaaacctgtgaaagagtagcgagtatcttc 40326404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 196
Target Start/End: Original strand, 40363351 - 40363481
Alignment:
Q  66 aaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggtttccacccttcaatccctcatcatccatgaagattttgaatccctcacgacg 165  Q
    |||||||||||| ||| ||| ||||||| | |||| |||||| |||||||||||| | |||||||| ||||||||||| ||||||||||||||||||| |    
T  40363351 aaagccttgattgttcgatttctttgagaagagttagtgaaacttggtttccaccatccaatcccttatcatccatgacgattttgaatccctcacgatg 40363450  T
Q  166 caaatcatgatagagaaatcctgtaaaagag 196  Q
     ||| ||||||||| || || ||||||||||    
T  40363451 aaaagcatgatagataattcatgtaaaagag 40363481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 230
Target Start/End: Complemental strand, 40283647 - 40283456
Alignment:
Q  39 caaagttttcagacaaaacaacaactgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggtttccacccttcaatccctcatcatc 138  Q
    ||||||||||||| |||||||||| ||||| |||||||   ||||||||||||| || || |  ||||||||  |  || || |||| | ||||||||||    
T  40283647 caaagttttcagaaaaaacaacaattgaaatccttgatgcctcaattgctttgactagagatgatgaaatttcctccccgcctttcagttcctcatcatc 40283548  T
Q  139 catgaagattttgaatccctcacgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatcttccccgcaaaaactgagaaaaa 230  Q
    ||||||| | ||||| ||||| || | |||| ||| ||||||||| ||||||||||| |  |||||||||||||| | ||||||||| ||||    
T  40283547 catgaaggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaa 40283456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 40256888 - 40257098
Alignment:
Q  32 gaatatccaaagttttcagacaaaacaacaactgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggtttccacccttcaatccct 131  Q
    |||||| |||||||||| || ||||||| ||  ||||||||||||  ||||||||| ||||| |  |   ||||||||||||  ||||||| ||||||      
T  40256888 gaatatgcaaagttttcggataaaacaataatggaaagccttgatgcttcaattgcattgagaagtgaaagtgaaatttggtcaccaccctccaatcctc 40256987  T
Q  132 catcatccatgaagattttgaatccctcacgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatcttccccgcaaaaactgagaaaaac 231  Q
    | |||||||||||| |||| |||||  |  | | |||| || |||||||| | ||||||||||| || ||||||||||| || | ||| ||||||||||     
T  40256988 cttcatccatgaaggttttaaatccgacctggcacaaagcacgatagagagagcctgtaaaagaataacgagtatcttctcctcgaaagctgagaaaaat 40257087  T
Q  232 atcgtagcgag 242  Q
    || ||||||||    
T  40257088 atggtagcgag 40257098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 44 - 209
Target Start/End: Complemental strand, 40311290 - 40311125
Alignment:
Q  44 ttttcagacaaaacaacaactgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggtttccacccttcaatccctcatcatccatga 143  Q
    |||| ||| ||||||| |||||||| |||||||   ||||||||||||| || ||    |||||||| || |||||||||||| ||||||||||||||||    
T  40311290 tttttagagaaaacaataactgaaatccttgatgcctcaattgctttgattagagaagatgaaatttcgtctccacccttcaacccctcatcatccatga 40311191  T
Q  144 agattttgaatccctcacgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatctt 209  Q
    || | ||||| || || || |  | | ||| ||||||||| || ||||||||||  ||||||||||    
T  40311190 aggtcttgaacccttcccggcatagagcatcatagagaaaacccgtaaaagagtcacgagtatctt 40311125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 40388482 - 40388436
Alignment:
Q  16 atcaagacaccacgtggaatatccaaagttttcagacaaaacaacaa 62  Q
    |||||||||||| || |||||||||||||||||||||||||||||||    
T  40388482 atcaagacaccatgtcgaatatccaaagttttcagacaaaacaacaa 40388436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 40334000 - 40333957
Alignment:
Q  185 cctgtaaaagagtagcgagtatcttccccgcaaaaactgagaaa 228  Q
    ||||||||||||||||||||||||||||| | ||||||||||||    
T  40334000 cctgtaaaagagtagcgagtatcttcccctctaaaactgagaaa 40333957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 40387278 - 40387235
Alignment:
Q  185 cctgtaaaagagtagcgagtatcttccccgcaaaaactgagaaa 228  Q
    ||||||||||||||||||||||||||||| | ||||||||||||    
T  40387278 cctgtaaaagagtagcgagtatcttcccctctaaaactgagaaa 40387235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 40278048 - 40277990
Alignment:
Q  16 atcaagacaccacgtggaatatccaaagttttcagacaaaacaacaactgaaagccttg 74  Q
    |||||||||||| ||||||  | || ||||||||||||||||||||| |||||||||||    
T  40278048 atcaagacaccatgtggaacttgcatagttttcagacaaaacaacaattgaaagccttg 40277990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 40377202 - 40377061
Alignment:
Q  16 atcaagacaccacgtggaatatccaaagttttcagacaaaacaacaactgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggttt 115  Q
    |||||||||||| ||||||| | || |||||||||||||||||| || |||||| |||| |  ||||||||| ||  | | ||  ||||||||| ||| |    
T  40377202 atcaagacaccatgtggaatttgcatagttttcagacaaaacaataattgaaagtcttgttgcttcaattgcatttcgaagagaatgtgaaattcggtct 40377103  T
Q  116 ccacccttcaatccctcatcatccatgaagattttgaatccc 157  Q
    |||   | |||||| | |||||||||||| || |||||||||    
T  40377102 ccagtgtgcaatcctttatcatccatgaaaatcttgaatccc 40377061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 40303604 - 40303504
Alignment:
Q  124 caatccctcatcatccatgaagattttgaatccctcacgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatcttccccgcaaaaactg 223  Q
    ||||||| ||| |||||||||  |||||||||| || ||||  | | ||| ||||||||| || ||||||||||| ||||||||||| || | |||||||    
T  40303604 caatcccccataatccatgaatgttttgaatccttctcgacagagagcatcatagagaaaacccgtaaaagagtaccgagtatcttctcctctaaaactg 40303505  T
Q  224 a 224  Q
    |    
T  40303504 a 40303504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 40334169 - 40334098
Alignment:
Q  16 atcaagacaccacgtggaatatccaaagttttcagacaaaacaacaactgaaagccttgatttttcaattgc 87  Q
    |||||||||||| ||||||| | || |||||||||||||||||| ||  ||||| ||||||  |||||||||    
T  40334169 atcaagacaccatgtggaatttgcatagttttcagacaaaacaataatcgaaagtcttgatgcttcaattgc 40334098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 40387447 - 40387376
Alignment:
Q  16 atcaagacaccacgtggaatatccaaagttttcagacaaaacaacaactgaaagccttgatttttcaattgc 87  Q
    |||||||||||| ||||||| | || |||||||||||||||||| ||  ||||| ||||||  |||||||||    
T  40387447 atcaagacaccatgtggaatttgcatagttttcagacaaaacaataatcgaaagtcttgatgcttcaattgc 40387376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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