View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15113_low_8 (Length: 323)
Name: NF15113_low_8
Description: NF15113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15113_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 17767398 - 17767588
Alignment:
| Q |
14 |
caaaggtagaaaagaagttattacagtataatatataaactgcaatgaaaggcacaagaacacttccaatccaaagttgaccatctttctcctctacttc |
113 |
Q |
| |
|
||||||||||||||||||||||| ||| || ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17767398 |
caaaggtagaaaagaagttattatagttta-----taaactgcaataaaaggcataagaacacttccaatccaaagttgaccatctttctcctctacttc |
17767492 |
T |
|
| Q |
114 |
agtcactgctctaacaatttttccctcactatcctccaacatctgcagcaacttaccttcaggactatacttcacagtcccaccatgtagcttacc |
209 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| || ||||||||| |||||| |
|
|
| T |
17767493 |
actcactgctctaacaacttttccctcactatcctccaatatctgcagcaatttaccttcaggactatacttcacaatcacaccatgtaacttacc |
17767588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 227 - 305
Target Start/End: Original strand, 17768190 - 17768268
Alignment:
| Q |
227 |
aagacggctagctaattaggtaaggtttaccgacctgccaatagacccttcacaaaaaacaaagaaggaaccatctttg |
305 |
Q |
| |
|
|||| |||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17768190 |
aagatggctagctaaagaggtaaggtttacagacctgccgatagacccttcacaaaaaacaaagaaggaacaatctttg |
17768268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 36947199 - 36947062
Alignment:
| Q |
48 |
ataaactgcaatgaaaggcacaagaacacttccaatccaaagttgaccatctttctcctctacttcagtcactgctctaacaatttttccctcactatcc |
147 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| ||||| |||| |||||| |||||||| |||||| |||||||| |||||| |||||||||| | ||| |
|
|
| T |
36947199 |
ataaactgcaatgaaaggcatcaaaacacttcctatccagagtttaccatccttctcctccacttcactcactgctttaacaacttttccctcattgtcc |
36947100 |
T |
|
| Q |
148 |
tccaacatctgcagcaacttaccttcaggactatactt |
185 |
Q |
| |
|
||||| || ||||| | ||||| ||||| |||||||| |
|
|
| T |
36947099 |
tccaatatttgcagaagtttaccgtcagggctatactt |
36947062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University