View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15113_low_9 (Length: 314)
Name: NF15113_low_9
Description: NF15113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15113_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 8465665 - 8465534
Alignment:
| Q |
20 |
aagtggtagtaggtgattaacaataaacaatcatcataattcataatggtagtaggtgttggatttttgtgctatatttgatacaataagtggctcattt |
119 |
Q |
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| T |
8465665 |
aagtggtagtaagtgattaacaataaacaaacatcataattcataatggtagtaggtgttggatttttgtgctatatttgatacaataagtggctcattt |
8465566 |
T |
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| Q |
120 |
agatgcttctctcttcatcattcatttactca |
151 |
Q |
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| T |
8465565 |
cgatgcttctctgttcatcattcattcactca |
8465534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 8465706 - 8465666
Alignment:
| Q |
20 |
aagtggtagtaggtgattaacaataaacaatcatcataatt |
60 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |
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| T |
8465706 |
aagtggtagtaggtgattaacaataaacaaacatcataatt |
8465666 |
T |
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