View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15114_low_1 (Length: 677)

Name: NF15114_low_1
Description: NF15114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15114_low_1
NF15114_low_1
[»] chr6 (11 HSPs)
chr6 (1-661)||(1193836-1194495)
chr6 (290-371)||(1183283-1183364)
chr6 (13-121)||(897601-897709)
chr6 (1-121)||(1236732-1236852)
chr6 (5-121)||(1182907-1183023)
chr6 (566-637)||(1188836-1188907)
chr6 (465-527)||(1183567-1183629)
chr6 (139-276)||(1236472-1236609)
chr6 (291-355)||(1236369-1236433)
chr6 (564-607)||(1183690-1183733)
chr6 (392-425)||(1188654-1188687)
[»] scaffold0302 (3 HSPs)
scaffold0302 (291-372)||(20472-20553)
scaffold0302 (6-103)||(20088-20184)
scaffold0302 (142-252)||(20295-20405)
[»] chr4 (4 HSPs)
chr4 (291-372)||(12857383-12857464)
chr4 (574-638)||(5457081-5457146)
chr4 (566-639)||(5510462-5510535)
chr4 (431-471)||(10204119-10204159)
[»] chr7 (1 HSPs)
chr7 (313-372)||(20256451-20256510)


Alignment Details
Target: chr6 (Bit Score: 629; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 1 - 661
Target Start/End: Original strand, 1193836 - 1194495
Alignment:
Q  1 ttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacagaaaatattggttgaaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1193836 ttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccattcaacagaaaatattggttgaaag 1193935  T
Q  101 gttgtaagataagtatagaatatgtgatgtggaaatggaaaaaggaagcgaatcaaatagccaacttgttagcaaaagtatgatcacaaatggatggcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1193936 gttgtaagataagtatagaatatgtgatgtggaaatggaaaaaggaagcaaatcaaatagccaacttgttagcaaaagtatgatcacaaatgggtggcaa 1194035  T
Q  201 cagaatatccaggcgtctatgtagataatgcagttctgccgagttctatttttgtagctgttgcagtatttttgcgtccgtcgtgttcaagggatttttc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1194036 cagaatatccaggcgtctatgtagataatgcagttctgccgagttctatttttgtagctgttgcagtatttttgcgtccgtcgtgttcaagggatttttc 1194135  T
Q  301 cttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttttgcatctgtcatgtgtttttaggtgataagtgttcaatagaaaat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1194136 cttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttttgcatctgtcatgtgtttttaggtgataagtgttcaatagaaaat 1194235  T
Q  401 caaaattgttcatgaactttgtgataattattcattgaattaattatatcatgagcagttggcttagaatctaacagcttaaatgaaagtttgacaagat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1194236 caaaattgttcatgaactttgtgataattattcattgaattaattgtatcatgagcagttggcttagaatctaacagcttaaatgaaagtttgacaagat 1194335  T
Q  501 acaagttaatgacaagactgaagtaacagaactatataagaattcctggaacagaaaagctaaatagaatggaataccacaaactattgatattacaaac 600  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1194336 acaagttaatgacaagactgaagtaacagaacca-ataagaattcctggaatagaaaagctaaatagaatggaataccacaaactattgatattacaaac 1194434  T
Q  601 taaggtccaagatttctagctattgttctaaacacaagctcattcgaaagatcatcaaact 661  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1194435 taaggtccaagatttctagctattgttctaaacacaagctcattcgaaagatcatcaaact 1194495  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 290 - 371
Target Start/End: Original strand, 1183283 - 1183364
Alignment:
Q  290 agggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttttgcatctgtcatgtgt 371  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1183283 agggagttttccttctggtggtcctatgcagtttgctggctgcagcatagttggggttgatatttttgcatctgtcatgtgt 1183364  T

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Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 897601 - 897709
Alignment:
Q  13 ttgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacagaaaatattggttgaaaggttgtaagataa 112  Q
    |||| |||||||||| |||| ||||| | |||||| | ||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||    
T  897601 ttggtttaaaagactcaaataaatctgagtttaagacaattgtttttgcagtttagttttcctttcaacagaaaatattggttgaaaggttgtaagataa 897700  T
Q  113 gtatagaat 121  Q
    |||||||||    
T  897701 gtatagaat 897709  T

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Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 1236852 - 1236732
Alignment:
Q  1 ttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacagaaaatattggttgaaag 100  Q
    |||||||||||||||| ||||||| || |||||||||| | |||||||| |||||||||||||| || |||||| |||| ||||||||||||||||||||    
T  1236852 ttgcaacatcaattggtttaaaaggctcaaatgaatctgagtttaaggcaattgtttttgcagtctagttgtcctttcagcagaaaatattggttgaaag 1236753  T
Q  101 gttgtaagataagtatagaat 121  Q
    ||| | |||| |||| |||||    
T  1236752 gttattagattagtacagaat 1236732  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 1182907 - 1183023
Alignment:
Q  5 aacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacagaaaatattggttgaaaggttg 104  Q
    |||||||||||| |||||||||| ||| |||||| | |||||||| ||| |||||||||| ||   |||| ||||| |||||||||||||||||||||||    
T  1182907 aacatcaattggtttaaaagactcaaacgaatctgagtttaaggcaattctttttgcagtctagcggtcctttcaaaagaaaatattggttgaaaggttg 1183006  T
Q  105 taagataagtatagaat 121  Q
    || || |||||||||||    
T  1183007 taggagaagtatagaat 1183023  T

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Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 566 - 637
Target Start/End: Original strand, 1188836 - 1188907
Alignment:
Q  566 agaatggaataccacaaactattgatattacaaactaaggtccaagatttctagctattgttctaaacacaa 637  Q
    ||||||||| ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| ||||||||    
T  1188836 agaatggaaaaccacaaaccattgatattacaaaccaaggttcaagatttctagctattgttcaaaacacaa 1188907  T

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Target: chr6; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 465 - 527
Target Start/End: Original strand, 1183567 - 1183629
Alignment:
Q  465 tagaatctaacagcttaaatgaaagtttgacaagatacaagttaatgacaagactgaagtaac 527  Q
    |||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||    
T  1183567 tagaatctaacagcttaaatgaaagtttgacacgatacaacttaacgacaagactgaagtaac 1183629  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 139 - 276
Target Start/End: Complemental strand, 1236609 - 1236472
Alignment:
Q  139 aaaaaggaagcgaatcaaatagccaacttgttagcaaaagtatgatcacaaatggatggcaacagaatatccaggcgtctatgtagataatgcagttctg 238  Q
    ||||||||||| |||||||||||| ||||||||  ||| | | ||||||| ||||||| |||  ||||||| |||  |  ||||||||||||||| ||||    
T  1236609 aaaaaggaagccaatcaaatagccgacttgttaataaatgaaggatcacagatggatgacaattgaatatctaggttttgatgtagataatgcaggtctg 1236510  T
Q  239 ccgagttctatttttgtagctgttgcagtatttttgcg 276  Q
    |  |||||| ||||||||||||||||| | ||||||||    
T  1236509 caaagttctgtttttgtagctgttgcactctttttgcg 1236472  T

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Target: chr6; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 1236433 - 1236369
Alignment:
Q  291 gggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttt 355  Q
    |||| |||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  1236433 gggagttttccttctggcggtcctatgcagtttgctggttgcagcatatttggtgttgatatttt 1236369  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 564 - 607
Target Start/End: Original strand, 1183690 - 1183733
Alignment:
Q  564 atagaatggaataccacaaactattgatattacaaactaaggtc 607  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  1183690 atagaaaggaaaaccacaaactattgatattacaaactaaggtc 1183733  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 425
Target Start/End: Original strand, 1188654 - 1188687
Alignment:
Q  392 atagaaaatcaaaattgttcatgaactttgtgat 425  Q
    ||||||||||||||||||||||||||||||||||    
T  1188654 atagaaaatcaaaattgttcatgaactttgtgat 1188687  T

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Target: scaffold0302 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 291 - 372
Target Start/End: Original strand, 20472 - 20553
Alignment:
Q  291 gggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttttgcatctgtcatgtgtt 372  Q
    |||||||||||||||||||||||||| |||||||||||| | | ||||||||| |||||||||||   ||||||||||||||    
T  20472 gggatttttccttctggtggtcctatacagtttgctggcagtaacatagttggagttgatattttgtgatctgtcatgtgtt 20553  T

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Target: scaffold0302; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 20088 - 20184
Alignment:
Q  6 acatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacagaaaatattggttgaaaggtt 103  Q
    ||||||||||| |||||||||| |||||||||| | |||||||| |||||||||||||| || || ||| ||||| |  |||||||||||||||||||    
T  20088 acatcaattggtttaaaagactcaaatgaatctgagtttaaggcaattgtttttgcagtctagttttcctttcaa-aataaatattggttgaaaggtt 20184  T

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Target: scaffold0302; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 252
Target Start/End: Original strand, 20295 - 20405
Alignment:
Q  142 aaggaagcgaatcaaatagccaacttgttagcaaaagtatgatcacaaatggatggcaacagaatatccaggcgtctatgtagataatgcagttctgccg 241  Q
    |||||||| ||||||||| || ||| ||||| ||||||| ||| || ||  |||||||| |||||||| |||  || |||| |||||||||| |||||||    
T  20295 aaggaagctaatcaaataaccgactcgttagtaaaagtaggattacgaactgatggcaatagaatatctaggtttcaatgtggataatgcaggtctgccg 20394  T
Q  242 agttctatttt 252  Q
    |||||| ||||    
T  20395 agttctgtttt 20405  T

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Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 291 - 372
Target Start/End: Original strand, 12857383 - 12857464
Alignment:
Q  291 gggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttttgcatctgtcatgtgtt 372  Q
    ||||||||||||||| ||||||||||||| ||||||| | ||||||||||||| |||||||||||  ||| |||||||||||    
T  12857383 gggatttttccttctagtggtcctatgcaatttgctgacagcagcatagttggagttgatattttgtcatatgtcatgtgtt 12857464  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 574 - 638
Target Start/End: Original strand, 5457081 - 5457146
Alignment:
Q  574 ataccacaaactattgatattacaaactaaggtccaagat-ttctagctattgttctaaacacaag 638  Q
    |||||| ||| || |||||| ||| ||||||||||||||| ||||||||||||||| |||||||||    
T  5457081 ataccaaaaagtactgatatgacatactaaggtccaagatcttctagctattgttcaaaacacaag 5457146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 639
Target Start/End: Complemental strand, 5510535 - 5510462
Alignment:
Q  566 agaatggaataccacaaactattgatattacaaactaaggtccaagatttctagctattgttctaaacacaagc 639  Q
    |||| |||| |||||||  || ||||||||||||| |||||||| ||||||||| |||| ||| ||||||||||    
T  5510535 agaaaggaaaaccacaatttagtgatattacaaaccaaggtccaggatttctagatattattcaaaacacaagc 5510462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 471
Target Start/End: Original strand, 10204119 - 10204159
Alignment:
Q  431 ttcattgaattaattatatcatgagcagttggcttagaatc 471  Q
    ||||||||||||||| |||||| |||| |||||||||||||    
T  10204119 ttcattgaattaattgtatcataagcacttggcttagaatc 10204159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 20256510 - 20256451
Alignment:
Q  313 ctatgcagtttgctggctgcagcatagttggtgttgatatttttgcatctgtcatgtgtt 372  Q
    |||||||||||| |||||||| ||||||||| |||||||||||  |||||||||||||||    
T  20256510 ctatgcagtttgttggctgcaacatagttggagttgatattttgtcatctgtcatgtgtt 20256451  T

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