View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15114_low_10 (Length: 247)
Name: NF15114_low_10
Description: NF15114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15114_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 48435202 - 48434964
Alignment:
| Q |
1 |
gaggctcaatgggctttggatcaacgcacactccatggtctccaagttccagaatctaagaacaacaaccaccaccacgagcaatctgaaatggctgagc |
100 |
Q |
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| T |
48435202 |
gaggctcaatgggctttggatcaacgcacactccatggtctccaagttccagaatctaagaacaacaaccaccaccacgagcaatctgaaatggctgagc |
48435103 |
T |
|
| Q |
101 |
aagccaagagacgtgctgaagctgccaggtacatttctataat----nnnnnnntatatatgcatctgattaaagatatggtatttaattttggattagt |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
48435102 |
aagccaagagacgtgctgaagctgccaggtacatttctataataaaaaaaataaaaaaaatgcatctgattaaagatatggtatttaattttggattagt |
48435003 |
T |
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| Q |
197 |
gtatatatagtaatgcttattttaattttgatcaatatt |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
48435002 |
gtatatatagtaatgcttattttaattttgatcaatatt |
48434964 |
T |
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