View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15114_low_14 (Length: 227)
Name: NF15114_low_14
Description: NF15114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15114_low_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 26209430 - 26209656
Alignment:
| Q |
1 |
tcttattcgaatacaaaatcactcggtatttatataccgaacaaaataggatgcacgataaatcaatagggtgaaaaaaggagtcatattatttatgcaa |
100 |
Q |
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| T |
26209430 |
tcttattcgaatacaaaatcactcggtatttatataccgaacaaaataggaggcacgataaatcaatagggtgaaaaaaggagtcatattatttatgcaa |
26209529 |
T |
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| Q |
101 |
ctcagatcaatgtgtttattcatacttttatttgatagagtatttttgtcataaaaaagaaatgaatggtcatgcattggagaatagttacttgttgttc |
200 |
Q |
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| T |
26209530 |
cttagatcaatgtgtttattcatacttttatttgatagagtatttttgtcataaaaaagaaatgaatggtcatgcatcggagaatagttacttgttgttc |
26209629 |
T |
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| Q |
201 |
tgttcaataattaactacaaatagtca |
227 |
Q |
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| T |
26209630 |
tgttcagtaattaactacaaatagtca |
26209656 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 5536874 - 5536832
Alignment:
| Q |
38 |
cgaacaaaataggatgcacgataaatcaatagggtgaaaaaag |
80 |
Q |
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| T |
5536874 |
cgaacaaaatagggtgcacgagaaattaatagggtgaaaaaag |
5536832 |
T |
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