View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15114_low_2 (Length: 428)
Name: NF15114_low_2
Description: NF15114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15114_low_2 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 272 - 428
Target Start/End: Complemental strand, 24105783 - 24105627
Alignment:
| Q |
272 |
tctaaagcctactccaacaatttatcatcattttcaactccaacaaaaacaaaaatagatagcaactaaattagtaaaattgttgccttcaaatattcat |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24105783 |
tctaaagcctactccaacaatttatcatcattttcaactccaacaaaaacaaaaatagatagcaactaaattagtaaaattgttaccttcaaatattcat |
24105684 |
T |
|
| Q |
372 |
attcactcaacaatgacataaagaatgccttagttattgattagcaccaatgaattc |
428 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24105683 |
attcactcaacaatgacataaataatgccttagttattgattagcaccaatgaattc |
24105627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 114 - 244
Target Start/End: Complemental strand, 24105908 - 24105778
Alignment:
| Q |
114 |
ctcatatatgttttagataaacagatttgctaatgtagagaaagaaataaattcaaatgtgatatatatttccatatactttccattgcaagatttatgt |
213 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24105908 |
ctcatatatgttttagataaacaaatttgctaatttagagaaagaaataaattcaaacgtgatataaatttccatatactttccattgcaagatttatgt |
24105809 |
T |
|
| Q |
214 |
acaaattctaaacttcattccttcatctaaa |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
24105808 |
acaaattctaaacttcattccttcatctaaa |
24105778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 24105064 - 24105028
Alignment:
| Q |
280 |
ctactccaacaatttatcatcattttcaactccaaca |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24105064 |
ctactccaacaatttatcatcattttcaactccaaca |
24105028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 24105989 - 24105957
Alignment:
| Q |
20 |
tcttaaaataatttttggcatataagcagctct |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
24105989 |
tcttaaaataatttttggcatataagcagctct |
24105957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University