View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15114_low_3 (Length: 421)
Name: NF15114_low_3
Description: NF15114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15114_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 13 - 404
Target Start/End: Original strand, 24600637 - 24601028
Alignment:
| Q |
13 |
aatatttgaccacattttttaaccctcccttactttgttacactctatgtttgaatctatcccaataaataccttataatttttcacaaattctcattct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24600637 |
aatatttgaccacattttttaaccctcccttactttgttacactctatgtttgaatctatcccaataaataccttataatttttcacaaattctcattct |
24600736 |
T |
|
| Q |
113 |
atttcacattctctctttatcttttataaatttctttacaatgttccaccgttatcctttcacacaaaagttcctttcatcttgcagggataatatgaat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
24600737 |
atttcacattctctctttatcttttataaatttctttacaatgttccaccgttgtcctttcatacaaaagttcctttcatcttgcagggataataagaat |
24600836 |
T |
|
| Q |
213 |
agtcaaaaggtaatgtcctactctgcaaattcgttccatctgtttggatttgggttgctcatcaaagtctttatttaccttctcccccttctcaagatgt |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24600837 |
agtcaaaaggtaatgtcctactctgcaaattcgttccatctgtttggatttgggttgctcatcaaagtctttatttaccttctcccccttctcaagatgt |
24600936 |
T |
|
| Q |
313 |
gcgagagaaaacaaacatttccctaatctccttcttaagatatgagagaggaaaataaaccttccattcttctttgtatatcttattgtacc |
404 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24600937 |
gcgagagaaaacaaacatttccctcatctccttcttaagatatgagagaggaaaataaaccttccattcttctctgtatatcttattgtacc |
24601028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 24459807 - 24459906
Alignment:
| Q |
29 |
ttttaaccctcccttactttgtt-acactctatgtttgaatctatcccaataaataccttataatttttcacaaattctcattctatttcacattctctc |
127 |
Q |
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||||||||||||||| ||| || ||||| ||||||||||| || ||| |||||||| || | ||| || |||||||||||||| | | ||||||||||| |
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|
| T |
24459807 |
ttttaaccctcccttgatttctttacactttatgtttgaatttacccctataaatactttctcattcttaacaaattctcattccactccacattctctc |
24459906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 27 - 283
Target Start/End: Complemental strand, 32557528 - 32557270
Alignment:
| Q |
27 |
ttttttaaccctccctt-actttgttacactctatgtttgaatctatcccaataaataccttataatttttcacaaattctcattctatttcacattctc |
125 |
Q |
| |
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||||||||||||||||| |||| ||| | ||||||||||||| || || ||||||| ||| | ||| |||||||||||||||||||| ||||||||| |
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| T |
32557528 |
ttttttaaccctcccttgacttctttatagtctatgtttgaatttacccttataaatatcttcttattcttcacaaattctcattctatctcacattctt |
32557429 |
T |
|
| Q |
126 |
tctttatcttttataaatttctt-tacaatgttccaccgttatcctttcacacaaaagttcctttcatcttgcagggataatatgaatagtcaaaaggta |
224 |
Q |
| |
|
||||| ||||||||||||||||| || |||||| || ||| ||||||| ||||| || | |||||||| || |||||||||||| ||||||||| | |
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|
| T |
32557428 |
tctttctcttttataaatttcttctataatgtttcattgttggcctttcatacaaagatttatctcatcttgtagagataatatgaatggtcaaaaggca |
32557329 |
T |
|
| Q |
225 |
atgtcctactctgcaaattcgttccatctgtttggatttgggttgctcatcaaagtctt |
283 |
Q |
| |
|
|| ||| |||||||||||||| ||||||| || |||||| ||||||||| | |||||| |
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|
| T |
32557328 |
atatcccactctgcaaattcgctccatctattcagatttgagttgctcattagagtctt |
32557270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 23034391 - 23034458
Alignment:
| Q |
44 |
actttgttacactctatgtttgaatctatcccaataaataccttataatttttcacaaattctcattc |
111 |
Q |
| |
|
|||||||||||||||||| |||||| | ||| ||||||||||| | ||| |||||||||| |||||| |
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|
| T |
23034391 |
actttgttacactctatggttgaattcacccctataaataccttcttattcttcacaaattttcattc |
23034458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 275
Target Start/End: Original strand, 39806529 - 39806710
Alignment:
| Q |
95 |
ttcacaaattctcattctatttcacattctctctttatcttttataaatttctt-tacaatgttccaccgttatcctttcacacaaaagttcctttcatc |
193 |
Q |
| |
|
||||||||||| ||||| || ||||||||||| || |||||||||| |||||| ||||||||||||||||| ||||||| |||||| || | | ||| |
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|
| T |
39806529 |
ttcacaaattcccattccatctcacattctcttcttctcttttataattttcttctacaatgttccaccgttggcctttcatacaaaaagtcatctaatc |
39806628 |
T |
|
| Q |
194 |
ttgcagggataatatgaatagtcaaaaggtaatgtcctactctgcaaattcgttccatctgtttggatttgggttgctcatc |
275 |
Q |
| |
|
||| |||| || ||||||| |||||| || ||||||| ||| | |||||| | |||||||| | ||||| |||||||||| |
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|
| T |
39806629 |
ttgtagggttagtatgaatggtcaaatggcaatgtcccactttacaaattggcaccatctgtctagatttaagttgctcatc |
39806710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 20025663 - 20025610
Alignment:
| Q |
95 |
ttcacaaattctcattctatttcacattctctctttatcttttataaatttctt |
148 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||||| ||||||| ||||||| |
|
|
| T |
20025663 |
ttcacaaatcctcattccaactcacattctctctttatattttatacatttctt |
20025610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 21218504 - 21218580
Alignment:
| Q |
99 |
caaattctcattctatttcacattctctctttatcttttataaatttctt-tacaatgttccaccgttatcctttca |
174 |
Q |
| |
|
||||||||||||| || | ||||||| ||||| ||||||||||||||||| |||| |||||| |||||| ||||||| |
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|
| T |
21218504 |
caaattctcattccatcttacattctttctttctcttttataaatttcttctacattgttcctccgttagcctttca |
21218580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 51134858 - 51134794
Alignment:
| Q |
77 |
ataaataccttataatttttcacaaattctcattctatttcacattctctctttatcttttataa |
141 |
Q |
| |
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||||||||| || ||| ||||||||||||||||||| ||||||||||||||| |||||||||| |
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|
| T |
51134858 |
ataaatacccaatcattcttcacaaattctcattctaactcacattctctctttctcttttataa |
51134794 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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