View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15114_low_4 (Length: 304)

Name: NF15114_low_4
Description: NF15114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15114_low_4
NF15114_low_4
[»] chr2 (4 HSPs)
chr2 (6-181)||(37784370-37784547)
chr2 (245-284)||(37784267-37784306)
chr2 (39-91)||(2758461-2758513)
chr2 (39-91)||(26179622-26179674)
[»] chr5 (2 HSPs)
chr5 (18-143)||(11768411-11768538)
chr5 (40-156)||(39985350-39985467)
[»] chr3 (1 HSPs)
chr3 (18-143)||(36073798-36073924)
[»] chr4 (1 HSPs)
chr4 (40-156)||(11960113-11960229)
[»] chr8 (1 HSPs)
chr8 (30-170)||(30714-30856)
[»] chr1 (1 HSPs)
chr1 (40-115)||(19986871-19986946)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 6 - 181
Target Start/End: Complemental strand, 37784547 - 37784370
Alignment:
Q  6 tgggtagattatactaacctcctctaaggttgacttaaataacataaacaccccctctaatttcaaaccagacactaacctcccttattttagtatcaaa 105  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37784547 tgggtaaattatactaacctcccctaaggttgacttaaataacataaacacccactctaatttcaaaccagacactaacctcccttattttagtatcaaa 37784448  T
Q  106 ttaacaaacacctctcttccatcttaacaccattaaatctctgttaac--tctcactttccctcacattgttatgagc 181  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  37784447 ttaacaaactcctcccttccatcttaacaccattaaatctctgttaactctctcactttccctcacattgttatgagc 37784370  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 284
Target Start/End: Complemental strand, 37784306 - 37784267
Alignment:
Q  245 atttattgtgattgtttaggttcattctatttcatgaatc 284  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  37784306 atttattgtgattgtgtaggttcattctatttcatgaatc 37784267  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 2758513 - 2758461
Alignment:
Q  39 cttaaataacataaacaccccctctaatttcaaaccagacactaacctccctt 91  Q
    |||||||||||  |||| |||||||||||| |||| | |||||||||||||||    
T  2758513 cttaaataacactaacatcccctctaattttaaactaaacactaacctccctt 2758461  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 26179674 - 26179622
Alignment:
Q  39 cttaaataacataaacaccccctctaatttcaaaccagacactaacctccctt 91  Q
    ||||||||||| |||||||||||||| ||| |||| | |||| ||||||||||    
T  26179674 cttaaataacacaaacaccccctctagttttaaactaaacacaaacctccctt 26179622  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 11768411 - 11768538
Alignment:
Q  18 actaacctcctctaaggttgacttaaataacataaacaccccctctaatttcaaaccagacactaacctcccttattttagtatcaaat--taacaaaca 115  Q
    |||||||||| ||||||||| ||||||||||| |||   |||||||| ||| ||| || ||||||||||||||||||||  ||||||||    ||| |||    
T  11768411 actaacctcccctaaggttgtcttaaataacacaaaactcccctctagttttaaatcaaacactaacctcccttattttgttatcaaatggacacacaca 11768510  T
Q  116 cctctcttccatcttaacaccattaaat 143  Q
    |||| |||||||||||||||||||||||    
T  11768511 cctcccttccatcttaacaccattaaat 11768538  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 156
Target Start/End: Complemental strand, 39985467 - 39985350
Alignment:
Q  40 ttaaataacataaacaccccctctaatttcaaaccagacactaacctccctta-ttttagtatcaaattaacaaacacctctcttccatcttaacaccat 138  Q
    ||||||| |||||||||||||| || ||| |||| | |||| ||||||||||| ||||  ||||||||| ||||||||| | ||||||  |||||||| |    
T  39985467 ttaaatagcataaacaccccctttagttttaaactaaacacaaacctcccttattttttttatcaaattgacaaacaccacccttccactttaacaccgt 39985368  T
Q  139 taaatctctgttaactct 156  Q
    | |||| | |||||||||    
T  39985367 ttaatcaccgttaactct 39985350  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 36073798 - 36073924
Alignment:
Q  18 actaacctcctctaaggttgacttaaataacataaacacc-ccctctaatttcaaaccagacactaacctcccttattttagtatcaaattaacaaacac 116  Q
    ||||||||||  |||  ||| ||||||||||| ||| ||  ||||||| ||| ||| || ||||||||||||||||||||  || |||||  ||| ||||    
T  36073798 actaacctcccttaaaattgtcttaaataacacaaatacttccctctagttttaaatcaaacactaacctcccttattttgttaccaaatagacacacac 36073897  T
Q  117 ctctcttccatcttaacaccattaaat 143  Q
    ||| |||||||||||||||||||||||    
T  36073898 ctcccttccatcttaacaccattaaat 36073924  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 11960113 - 11960229
Alignment:
Q  40 ttaaataacataaacaccccctctaatttcaaaccagacactaacctcccttattttagtatcaaattaacaaacacctctcttccatcttaacaccatt 139  Q
    ||||||| || |||||||||||||| ||| |||| | |||| |||||||||||||||  ||||||||| | ||||||| | ||||||  |||||||| ||    
T  11960113 ttaaatagcacaaacaccccctctagttttaaactaaacacaaacctcccttattttgttatcaaattgaaaaacaccacccttccactttaacaccgtt 11960212  T
Q  140 aaatctctgttaactct 156  Q
     |||| | |||||||||    
T  11960213 taatcaccgttaactct 11960229  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 30856 - 30714
Alignment:
Q  30 taaggttgacttaaataacataaacaccccctctaatttcaaaccagacactaacctcccttattttagtatcaaattaacaaacacctctcttccatct 129  Q
    |||||||  ||||||||||| ||| ||||||| || ||| |||| | |||||||||||||||||||   ||||||||| ||||| || || |||| | ||    
T  30856 taaggttttcttaaataacaaaaagaccccctttagttttaaactaaacactaacctcccttatttagttatcaaattgacaaatacttcccttcaacct 30757  T
Q  130 taacaccattaaatctctgttaac--tctcactttccctcaca 170  Q
    |||||| |||||||| | |||| |  |||||||||| ||||||    
T  30756 taacactattaaatcaccgttatctttctcactttcactcaca 30714  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 19986946 - 19986871
Alignment:
Q  40 ttaaataacataaacaccccctctaatttcaaaccagacactaacctcccttattttagtatcaaattaacaaaca 115  Q
    ||||||| || ||||||| |||||| ||| |||| | | || |||||||||||||||| ||| |||||||||||||    
T  19986946 ttaaatagcacaaacacctcctctagttttaaactaaatacaaacctcccttattttattattaaattaacaaaca 19986871  T

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