View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15114_low_6 (Length: 278)
Name: NF15114_low_6
Description: NF15114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15114_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 7729864 - 7729615
Alignment:
| Q |
18 |
tttaggactcaaaaaaccaccatattcatcttcaagagcttgagggagatcagagtgaaatagagttataaatggtgtttgtcctgtagacaaaaatgtg |
117 |
Q |
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| T |
7729864 |
tttaggactcaaaaaaccaccatattcatcttcaagagcttgagggagatcagagtgaaatagagttataaatggtgtttgtcctgtagacaaaaatgtg |
7729765 |
T |
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| Q |
118 |
catcaaaatcaaatatactagttattttaaggtatcattaggnnnnnnnnnnnngagaaagtgagagtgaagttatacttaccatttgaaatcagttcat |
217 |
Q |
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| T |
7729764 |
catcaaaatcaaatatactagttattttaaggtatcattaggaaaaaataaaaagagaaagtgagagtgaagttatacttaccatttgaaatcaattcat |
7729665 |
T |
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| Q |
218 |
ttatgagattgttgtaatatatcacgccttcttgattaattccacccttt |
267 |
Q |
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| T |
7729664 |
ttatgagattgttgtaatatataacgccttcttgattaattccacccttt |
7729615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 25168913 - 25168985
Alignment:
| Q |
21 |
aggactcaaaaaaccaccatattcatcttcaagagcttgagggagatcagagtgaaatagagttataaatggt |
93 |
Q |
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| T |
25168913 |
aggacttaagaaaccgccatattcatcttctagagtttgaggaagatcccaatgaaaaagagttacaaatggt |
25168985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 8090566 - 8090497
Alignment:
| Q |
18 |
tttaggactcaaaaaaccaccatattcatcttcaagagcttgagggagatcagagtgaaatagagttata |
87 |
Q |
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| T |
8090566 |
tttaggactcaagaaacctccatattcatcttcaagagcttgtggaagatcccagtgaaataaagttata |
8090497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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