View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15114_low_9 (Length: 251)

Name: NF15114_low_9
Description: NF15114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15114_low_9
NF15114_low_9
[»] chr7 (11 HSPs)
chr7 (17-251)||(4631377-4631611)
chr7 (17-251)||(4667391-4667619)
chr7 (91-153)||(4637378-4637440)
chr7 (91-153)||(4711584-4711646)
chr7 (91-153)||(4864446-4864508)
chr7 (78-155)||(4654004-4654081)
chr7 (89-153)||(4696702-4696766)
chr7 (89-152)||(4644214-4644277)
chr7 (78-147)||(4783353-4783422)
chr7 (78-147)||(4815782-4815851)
chr7 (91-155)||(4673224-4673288)
[»] chr4 (1 HSPs)
chr4 (17-251)||(18925159-18925387)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 4631377 - 4631611
Alignment:
Q  17 aagaaggcatagacacaatctcaattccgttgatgaaagctaaaccatttaattggtttgtgtttgtatttttgggaatgaaagttatgtttagcttctc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631377 aagaaggcatagacacaatctcaattccgttgatgaaagctaaaccatttaattggtttgtgtttgtatttttgggaatgaaagttatgtttagcttctc 4631476  T
Q  117 atttggagcaatttgtatgcaatattctttggtgattgtcttgctatcgtttgaaagccaaagcgagggattaaagtctttgagaaggggaaggttggtt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4631477 atttggagcaatttgtatgcaatattctttggtgattgtcttgctatcgtttgaaagccaaagcgagggattaaagtctttgagaagggtaaggttggtt 4631576  T
Q  217 cctactttgactgtgaagagggcgttgtaggtttc 251  Q
    ||||||||||||||||||||||||||| |||||||    
T  4631577 cctactttgactgtgaagagggcgttggaggtttc 4631611  T

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Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 4667391 - 4667619
Alignment:
Q  17 aagaaggcatagacacaatctcaattccgttgatgaaagctaaaccatttaattggtttgtgtttgtatttttgggaatgaaagttatgtttagcttctc 116  Q
    |||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||      |||||||||||||||| || ||| |||||    
T  4667391 aagacggcatagacacaatctcaattccgttgatgaaagcaaaagcatttaattggtttgtgttt------ttgggaatgaaagttacgtctagtttctc 4667484  T
Q  117 atttggagcaatttgtatgcaatattctttggtgattgtcttgctatcgtttgaaagccaaagcgagggattaaagtctttgagaaggggaaggttggtt 216  Q
       | |     | || ||||||||||||||||||||||||||| ||||||||| ||||||||| || ||  |||||||||||||||||| ||||||||||    
T  4667485 cccttgtttggtatggatgcaatattctttggtgattgtcttgttatcgtttggaagccaaagtgaagggctaaagtctttgagaagggtaaggttggtt 4667584  T
Q  217 cctactttgactgtgaagagggcgttgtaggtttc 251  Q
    |||||||||||||||||||| |||||| |||||||    
T  4667585 cctactttgactgtgaagagagcgttggaggtttc 4667619  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 4637378 - 4637440
Alignment:
Q  91 ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgatt 153  Q
    ||||||||||||||||||| ||| ||||||||    |||||||||||||||||||||||||||    
T  4637378 ggaatgaaagttatgtttaacttttcatttggtttgatttgtatgcaatattctttggtgatt 4637440  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 4711646 - 4711584
Alignment:
Q  91 ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgatt 153  Q
    ||||||||||||||| ||||||||||||||||    ||||| |||||||||||||||||||||    
T  4711646 ggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatattctttggtgatt 4711584  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 4864446 - 4864508
Alignment:
Q  91 ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgatt 153  Q
    |||||||||||||||||||||||||||||||     ||||| |||||||||||||||||||||    
T  4864446 ggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatattctttggtgatt 4864508  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 4654004 - 4654081
Alignment:
Q  78 gtttgtatttttgggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgattgt 155  Q
    |||||| || |||||||||||||||||||||||||||| ||| ||    | ||| |||||||||||||||||||||||    
T  4654004 gtttgtgttgttgggaatgaaagttatgtttagcttcttattcggttggacttggatgcaatattctttggtgattgt 4654081  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 4696766 - 4696702
Alignment:
Q  89 tgggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgatt 153  Q
    ||||||||||||||||||||| ||||||||||||     |||| |||||||||||||||||||||    
T  4696766 tgggaatgaaagttatgtttaacttctcatttggtttggtttgaatgcaatattctttggtgatt 4696702  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 4644214 - 4644277
Alignment:
Q  89 tgggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgat 152  Q
    |||||||||||||||||||||||||||||||||    |||||| |||||||| |||||| ||||    
T  4644214 tgggaatgaaagttatgtttagcttctcatttgttttaatttggatgcaatactctttgatgat 4644277  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 4783422 - 4783353
Alignment:
Q  78 gtttgtatttttgggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttg 147  Q
    |||||| || ||||||||||||||||||||||||||||| |||||    ||||| ||| |||||||||||    
T  4783422 gtttgtgttgttgggaatgaaagttatgtttagcttctcgtttggtttgatttggatggaatattctttg 4783353  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 4815851 - 4815782
Alignment:
Q  78 gtttgtatttttgggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttg 147  Q
    |||||| || ||||||||||||||||||||||||||||| |||||    ||||| ||| |||||||||||    
T  4815851 gtttgtgttgttgggaatgaaagttatgtttagcttctcgtttggtttgatttggatggaatattctttg 4815782  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 4673224 - 4673288
Alignment:
Q  91 ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgattgt 155  Q
    ||||||||| ||||||||||||||||||| ||    ||||| || ||| ||||||||||||||||    
T  4673224 ggaatgaaatttatgtttagcttctcattgggcttgatttggatacaaaattctttggtgattgt 4673288  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 18925387 - 18925159
Alignment:
Q  17 aagaaggcatagacacaatctcaattccgttgatgaaagctaaaccatttaattggtttgtgtttgtatttttgggaatgaaagttatgtttagcttctc 116  Q
    |||||||||| ||||| |||||||||||||||||||||||  || | |||  ||| ||| ||   || |||   |||||||||||||| |||| ||||||    
T  18925387 aagaaggcatggacacgatctcaattccgttgatgaaagcataagcctttggttgatttatg---gtgttt---ggaatgaaagttatatttaacttctc 18925294  T
Q  117 atttggagcaatttgtatgcaatattctttggtgattgtcttgctatcgtttgaaagccaaagcgagggattaaagtctttgagaaggggaaggttggtt 216  Q
    | ||||    ||||  | ||| || ||||| |||||||||||| ||||||||  ||||||||| | ||| |||||||| ||||||||||  |  ||||||    
T  18925293 agttggtttcattttgaggcagtactctttcgtgattgtcttgttatcgttttgaagccaaagtgcggggttaaagtcattgagaagggtgacattggtt 18925194  T
Q  217 cctactttgactgtgaagagggcgttgtaggtttc 251  Q
    || |||||||| ||||||||||||| | |||||||    
T  18925193 ccaactttgacggtgaagagggcgtcgaaggtttc 18925159  T

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