View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15115_high_13 (Length: 236)

Name: NF15115_high_13

Description: NF15115

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15115_high_13

[»] chr4 (3 HSPs)

[»] scaffold1749 (1 HSPs)

[»] scaffold0428 (1 HSPs)

Alignment Details

Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 3)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 130; E-Value: 2e-67

Query Start/End: Original strand, 3 - 236

Target Start/End: Original strand, 31030686 - 31030907

Alignment:

Q	3	aggagttgctgctgctagccatctgaatatgctaaattgactatgaatactgagttcctatgaaattatcagtggtgct-------tctcaagtctcaac	95	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31030686	aggagttgctgctgctagccatctgaatatgctaaattgattatgaatgctgagttcctatgaaattatcagtggtgcttctcaagtctcaagtctcaac	31030785	T

Q	96	tatatattattaaaattcttatatattgtcatataaggacaaagcaatttcataattcgatcctcaaagtatataccccactcattttacaaagc-aaat	194	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	31030786	tatatattattaaaattcttatatattgtcatataaggacaaagcaatt-------------ct-------tataccccactcattttacaaagcaaaat	31030865	T

Q	195	aaattggacaaaaagagataaaatctttctccttttttactt	236	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31030866	aaattggacaaaaagagataaaatctttctccttttttactt	31030907	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2

Raw Score: 89; E-Value: 5e-43

Query Start/End: Original strand, 3 - 129

Target Start/End: Original strand, 31020805 - 31020939

Alignment:

Q	3	aggagttgctgctgctagccatctgaatatgctaaattgactatgaatactgagttcctatgaaattatcagtggtgct-------tctcaagtctcaac	95	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31020805	aggagttgctgctgctagccatctgaatatgctaagttgattatgaatactgagttcctatgaaattatcagtggtgcttctcaagtctcaagtctcaac	31020904	T

Q	96	tatatattattaaaattctt-atatattgtcatat	129	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|
T	31020905	tatatattattaaaattcttaatatattgccatat	31020939	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3

Raw Score: 66; E-Value: 3e-29

Query Start/End: Original strand, 130 - 230

Target Start/End: Original strand, 31020981 - 31021081

Alignment:

Q	130	aaggacaaagcaatttcataattcgatcctcaaagtatataccccactcattttacaaagc-aaataaattggacaaaaagagataaaatctttctcctt	228	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31020981	aaggacaaagcaatttcattattcgatccgcaaagtatataccccactcattttacaaagcaaaatatattgtagaaaaagagat-aaatctttctcctt	31021079	T

Q	229	tt	230	Q
		\|\|
T	31021080	tt	31021081	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)

Name: scaffold1749

Description:

Target: scaffold1749; HSP #1

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 5 - 33

Target Start/End: Original strand, 1076 - 1104

Alignment:

Q	5	gagttgctgctgctagccatctgaatatg	33	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1076	gagttgctgctgctagccatctgaatatg	1104	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)

Name: scaffold0428

Description:

Target: scaffold0428; HSP #1

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 5 - 33

Target Start/End: Original strand, 9837 - 9865

Alignment:

Q	5	gagttgctgctgctagccatctgaatatg	33	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	9837	gagttgctgctgctagccatctgaatatg	9865	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]