View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15115_high_14 (Length: 232)

Name: NF15115_high_14
Description: NF15115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15115_high_14
NF15115_high_14
[»] chr1 (11 HSPs)
chr1 (22-218)||(1842807-1843003)
chr1 (22-214)||(1868420-1868612)
chr1 (28-211)||(1856828-1857008)
chr1 (107-211)||(1816112-1816216)
chr1 (118-206)||(9161948-9162036)
chr1 (97-206)||(9156015-9156124)
chr1 (125-217)||(9118405-9118497)
chr1 (125-206)||(9218864-9218945)
chr1 (110-206)||(9229734-9229830)
chr1 (125-206)||(9170781-9170862)
chr1 (125-206)||(9200348-9200429)
[»] chr7 (2 HSPs)
chr7 (93-173)||(37572123-37572203)
chr7 (175-211)||(37567770-37567806)
[»] chr3 (5 HSPs)
chr3 (130-206)||(40568387-40568463)
chr3 (130-214)||(40591285-40591369)
chr3 (118-206)||(40597775-40597863)
chr3 (118-215)||(40579436-40579533)
chr3 (118-178)||(40573016-40573076)
[»] chr2 (1 HSPs)
chr2 (145-206)||(2015288-2015349)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 1843003 - 1842807
Alignment:
Q  22 aaagattcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttaatacgttttgtgtgtataaaaccagaaagggtgccat 121  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||    
T  1843003 aaagtttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttattactttgtgtgtgtataaaaccagaaagggtgccat 1842904  T
Q  122 tggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaataat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1842903 tggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaataat 1842807  T

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Target: chr1; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 1868612 - 1868420
Alignment:
Q  22 aaagattcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttaatacgttttgtgtgtataaaaccagaaagggtgccat 121  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||    
T  1868612 aaagcttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttattactttgtgtgtgtataaaaccagaaagggtgccat 1868513  T
Q  122 tggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaa 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1868512 tggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaa 1868420  T

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Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 28 - 211
Target Start/End: Complemental strand, 1857008 - 1856828
Alignment:
Q  28 tcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttaatacgttttgtgtgtataaaaccagaaagggtgccattggtaa 127  Q
    |||||||||||||||||||||||||||||||| ||||| |||  || ||||  ||||   | ||||||||| |||||  ||||||| || |||||| |||    
T  1857008 tcagctacctctgcggctatcttaagacgagtcttccaagttggatcattcgtctta---ccttttgtgtgaataaattcagaaagagtaccattgctaa 1856912  T
Q  128 caaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagaga 211  Q
    |||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||| || ||||||||||||||||    
T  1856911 caaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacatttctgtgatttatttgagaga 1856828  T

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Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 1816112 - 1816216
Alignment:
Q  107 cagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg 206  Q
    ||||||| || |||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| |||||||||||    
T  1816112 cagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccccaagagtttgaccacattcctgtgatttatttg 1816211  T
Q  207 agaga 211  Q
    |||||    
T  1816212 agaga 1816216  T

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Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 9161948 - 9162036
Alignment:
Q  118 ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg 206  Q
    |||||| |||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  9161948 ccattgctaacgaattcatacaccaacgaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctatgatttatttg 9162036  T

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Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 97 - 206
Target Start/End: Original strand, 9156015 - 9156124
Alignment:
Q  97 tgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctat 196  Q
    ||||| ||| || |||| || |||||| |||| ||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||| || |    
T  9156015 tgtatgaaatcaaaaagtgtaccattgctaacgaattcataaaccaaggaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctgt 9156114  T
Q  197 gatttatttg 206  Q
    ||||||||||    
T  9156115 gatttatttg 9156124  T

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Target: chr1; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 9118497 - 9118405
Alignment:
Q  125 taacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaataa 217  Q
    |||| |||||||| |||||  |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||    
T  9118497 taacgaattcatagaccaaggaaggaacttctgtctctaaacaacaccctaaaagtttgacaacattcctatgatttatttgggacagaataa 9118405  T

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Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 9218864 - 9218945
Alignment:
Q  125 taacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg 206  Q
    ||||||||||||| |||||| |||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||    
T  9218864 taacaaattcatacaccaacgaaggaacttctgtctccaaacaacaccctaaaagtttgacaacgttcctatgatttatttg 9218945  T

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Target: chr1; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 110 - 206
Target Start/End: Original strand, 9229734 - 9229830
Alignment:
Q  110 aaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg 206  Q
    ||||||| |||||| ||| |||||||||||| |  |||||||||| |||||| |||||||| |||||||||||||||||||| ||||||||||||||    
T  9229734 aaagggtaccattgctaataaattcataaactagtaaaggaacttgtgtctccaaacaacatcccaagagtttgacaacatttctatgatttatttg 9229830  T

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Target: chr1; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 9170781 - 9170862
Alignment:
Q  125 taacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg 206  Q
    |||||||||| || |||||  |||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||    
T  9170781 taacaaattcgtacaccaatgaaggaacttctgtctctagacaacaccctaggagtttgacaacattcctatgatttatttg 9170862  T

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Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 9200348 - 9200429
Alignment:
Q  125 taacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg 206  Q
    |||||||||| || || ||  |||||||||||||||||| |||||| || | ||||||||||||||||||||||||||||||    
T  9200348 taacaaattcgtacactaatgaaggaacttctgtctctagacaacagcctaggagtttgacaacattcctatgatttatttg 9200429  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 37572203 - 37572123
Alignment:
Q  93 tgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccc 173  Q
    ||||||||||||  ||||||| || |||||| ||||||| ||||||||||||  |||||||||||| |||| |||||||||    
T  37572203 tgtgtgtataaattcagaaagagtaccattgctaacaaactcataaaccaaccgaggaacttctgtttctagacaacaccc 37572123  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 37567806 - 37567770
Alignment:
Q  175 aagagtttgacaacattcctatgatttatttgagaga 211  Q
    ||||||||||| |||||||||||||||||||||||||    
T  37567806 aagagtttgaccacattcctatgatttatttgagaga 37567770  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 40568463 - 40568387
Alignment:
Q  130 aattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg 206  Q
    ||||||||||| | ||| ||||||||||||||||||||||| |||||||| || || ||||| ||||| || |||||    
T  40568463 aattcataaacaagcaagggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttg 40568387  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 214
Target Start/End: Complemental strand, 40591369 - 40591285
Alignment:
Q  130 aattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaa 214  Q
    ||||||||||| | ||| ||||||||||||||||||||||| ||||| | | | || ||||| ||||| || |||||||| ||||    
T  40591369 aattcataaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgatttgagaaagaa 40591285  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 40597863 - 40597775
Alignment:
Q  118 ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg 206  Q
    ||||||| || |||||||||||| | ||| ||||||||||| ||||||||||| || |  ||||| || ||||||||||| || |||||    
T  40597863 ccattgggaataaattcataaacaagcaatggaacttctgtttctaaacaacaacctacaagttttaccacattcctatggttgatttg 40597775  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 40579533 - 40579436
Alignment:
Q  118 ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaat 215  Q
    ||||||| || |||||| ||||| |  || ||||||||||||||||||||||| ||||| |  || || ||||| |||||||| ||||| || |||||    
T  40579533 ccattgggaataaattcgtaaacaagtaacggaacttctgtctctaaacaacaacccaaaatctttaccacatttctatgattgatttgggaaagaat 40579436  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 40573076 - 40573016
Alignment:
Q  118 ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaaga 178  Q
    ||||||| || ||||||||| || |  || ||||||||||||||||||||||| |||||||    
T  40573076 ccattgggaataaattcatacacaactaagggaacttctgtctctaaacaacagcccaaga 40573016  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 2015288 - 2015349
Alignment:
Q  145 aaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg 206  Q
    |||||||||||||||||||||||||| |||||||| || || ||||| ||||| || |||||    
T  2015288 aaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttg 2015349  T

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