View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15115_high_5 (Length: 394)
Name: NF15115_high_5
Description: NF15115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15115_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 3 - 378
Target Start/End: Complemental strand, 50640673 - 50640298
Alignment:
| Q |
3 |
atgaagcatactattgaggagtgtgaagacgcagccattcaaggcgaagaaaaatattgtgcaacctcgcttgaatccatggttgattttagcatttcga |
102 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50640673 |
atgaagaatactattgaggagtgtgaagacgcagccattcaaggcgaagaaaaatattgtgcaacctcgcttgaatccatggttgattttagcatttcga |
50640574 |
T |
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| Q |
103 |
agcttgggaaaagagttaaggttgtgtctactacggtggtagacaacaagagtgcagggttaaagaaatacacactaaaatcaggattaatgaagctaac |
202 |
Q |
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| T |
50640573 |
agcttgggaaaagagttaaggttgtgtctactacggtggtagacaacaagagtgcagggttaaagaaatacacactaaaatcaggattaatgaagctaac |
50640474 |
T |
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| Q |
203 |
tgcagaggataaggctgttgtgtgtcacaaacaaaattatccatatgctatattttattgtcacaaaacagagagcacgagagcttattttgttcctttg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50640473 |
tgcagaggataaggctgttgtgtgtcacaaacaaaattatccatatgctatattttattgtcacaaaacagagagcacaagagcttattttgttcctttg |
50640374 |
T |
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| Q |
303 |
gaggccgataacgggactagagttaaagccgacgctgtagtggtatgccacacagatacatcaaaatggaaccccg |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50640373 |
gaggccgataacgggactagagttaaagccgacgctgtagtgatatgccacacagatacatcaaaatggaaccccg |
50640298 |
T |
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