View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15115_low_1 (Length: 444)
Name: NF15115_low_1
Description: NF15115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15115_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 2430967 - 2430536
Alignment:
| Q |
1 |
aggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttacggtactgtctacaatattcatgtctgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2430967 |
aggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttatagtactgtctacaatattcatgtctgat |
2430868 |
T |
|
| Q |
101 |
tctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattgagttgcaaaaatctttgtggtgtttgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2430867 |
tctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattgtgttgcaaaaatctttgtggtgtttgt |
2430768 |
T |
|
| Q |
201 |
gttgtacatgtacacatctaatacaactggccacatggtctgtacattcatctaacaaattgccaaatatgtaccttaatttaatttcaaggaacgattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2430767 |
gttgtacatgtacacatctaatacaactggccacatggtctgtacattcatctaacaaattgccaaatatgtaccttaatttaatttcaaggaacgattt |
2430668 |
T |
|
| Q |
301 |
agtcttttatct------tcnnnnnnnnncacattatttttgcccttttgatccatttgatatgaatattcaagttttaaatgtatgatttatttccttg |
394 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
2430667 |
agtcttttatcttttatcttcttttttttcacattatttttgcccttttgatccatttgatatgaatattcaacttttaaatctatgatttatttccttg |
2430568 |
T |
|
| Q |
395 |
tgacctctcagtctttagatttatggtctttc |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
2430567 |
tgacctctcagtctttagatttatggtctttc |
2430536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 2434547 - 2434339
Alignment:
| Q |
1 |
aggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttacggtactgtctacaatattcatgtctgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||| |||| ||||||||| ||||| || | ||||||| |
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|
| T |
2434547 |
aggatcacaagacaagtacagatttttgagcaaaaccacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttgaggtctgat |
2434448 |
T |
|
| Q |
101 |
tctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattgagttgcaaaaatctttgtggtgtttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | |||||||||||||||||||| |
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| T |
2434447 |
tctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcacttccgccatctcaggaattgtgtcactaaaatctttgtggtgtttgt |
2434348 |
T |
|
| Q |
201 |
gttgtacat |
209 |
Q |
| |
|
||||||||| |
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|
| T |
2434347 |
gttgtacat |
2434339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 2519223 - 2519370
Alignment:
| Q |
1 |
aggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttacggtactgtctacaatattcatgtctgat |
100 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||| | || |||||||||||| |
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|
| T |
2519223 |
aggatcacaagacaagtagagatttttgagcagaagaacatcattggaagcttgtggaagcttgagagttatggtactgtcaatgatgttcatgtctgat |
2519322 |
T |
|
| Q |
101 |
tctttaggaaaaccagacacatagtccttcagaatcacttgcttgttc |
148 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
2519323 |
tctttaggaaaaccagacacatagtgtttcagaattacttgcttgttc |
2519370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 1458006 - 1457834
Alignment:
| Q |
1 |
aggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttacggtactgtctacaatattcatgtctgat |
100 |
Q |
| |
|
||||||||| || ||||| |||||||||||||||||||||||||| |||||||||||||| |||||| | | ||||| || |||| ||||||||||||| |
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|
| T |
1458006 |
aggatcacaggataagtagagattttttagcagaacaacatcattggaaccttgtggaaggttgagaataattgtactatcaacaacattcatgtctgat |
1457907 |
T |
|
| Q |
101 |
tctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattg |
173 |
Q |
| |
|
|| ||||||||||||||||||||||| ||| ||||||||||||||| |||| || |||||| | |||||||| |
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|
| T |
1457906 |
tccttaggaaaaccagacacatagtctctcaaaatcacttgcttgtttctcacttgcgccatgttaggaattg |
1457834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 2427713 - 2427541
Alignment:
| Q |
1 |
aggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttacggtactgtctacaatattcatgtctgat |
100 |
Q |
| |
|
||||||||| || ||||| |||||||| ||||||||||||||||| |||||||||||||| |||||| | | ||||| || |||| ||||||||||||| |
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|
| T |
2427713 |
aggatcacaggataagtagagatttttgagcagaacaacatcattggaaccttgtggaaggttgagaataattgtactatcaacaacattcatgtctgat |
2427614 |
T |
|
| Q |
101 |
tctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattg |
173 |
Q |
| |
|
|| ||||||||||||||||||||||| ||| ||||||||||||||| |||| || |||||| | |||||||| |
|
|
| T |
2427613 |
tccttaggaaaaccagacacatagtctctcaaaatcacttgcttgtttctcacttgcgccatgttaggaattg |
2427541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 2 - 152
Target Start/End: Original strand, 2498890 - 2499037
Alignment:
| Q |
2 |
ggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttacggtactgtctacaatattcatgtctgatt |
101 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||| ||||| ||||||||||||||||| ||||| | |||| || | ||| ||||||||||||| |
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|
| T |
2498890 |
ggatcacaagacaagtataaattttttagcagaaca---tcattggaaccttgtggaagcttaagagtaattatactttcaataatgttcatgtctgatt |
2498986 |
T |
|
| Q |
102 |
ctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctca |
152 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
2498987 |
ctttaggaaaaccagatacatagtccttcagaatcacttgcttgttcctca |
2499037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 2507421 - 2507568
Alignment:
| Q |
1 |
aggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttacggtactgtctacaatattcatgtctgat |
100 |
Q |
| |
|
|||||||||||||||||| |||||||| | || ||| |||||| ||||||| ||||||||| ||| ||| ||||| || ||||| || | ||||||| |
|
|
| T |
2507421 |
aggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttgaggtctgat |
2507520 |
T |
|
| Q |
101 |
tctttaggaaaaccagacacatagtccttcagaatcacttgcttgttc |
148 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
2507521 |
tctttaggaaaaccagacacatagtgtttcagaagcacttgcttgttc |
2507568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 2514511 - 2514658
Alignment:
| Q |
1 |
aggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttacggtactgtctacaatattcatgtctgat |
100 |
Q |
| |
|
|||||||||||||||||| |||||||| | || ||| |||||| ||||||| ||||||||| ||| ||| ||||| || ||||| || | ||||||| |
|
|
| T |
2514511 |
aggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttgaggtctgat |
2514610 |
T |
|
| Q |
101 |
tctttaggaaaaccagacacatagtccttcagaatcacttgcttgttc |
148 |
Q |
| |
|
||||||||||||||||||||||| | ||||||| |||||||| |||| |
|
|
| T |
2514611 |
tctttaggaaaaccagacacataatgtttcagaagcacttgctggttc |
2514658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 2434264 - 2434227
Alignment:
| Q |
276 |
ttaatttaatttcaaggaacgatttagtcttttatctt |
313 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
2434264 |
ttaatttaatttcaagtaacgatttagttttttatctt |
2434227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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