View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15115_low_11 (Length: 250)
Name: NF15115_low_11
Description: NF15115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15115_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 55345778 - 55346017
Alignment:
| Q |
1 |
gcaatctcaactgcaaaacaagtggttgtaacaacgaattgaaacgacgagatctagttttatggtgagaacccctacatggtgagaacggannnnnnnn |
100 |
Q |
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| T |
55345778 |
gcaatctcaactgcaaaacaagtggttgtaacaacgaatcgaaacgacgagatctagttttatggtgagaacccctacatggtgagaacggatttttttc |
55345877 |
T |
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| Q |
101 |
-gggttcaaattattgtttccatgttgttctttagtactggggttgtgatttgttgttgatggttatgaatttatgagcttcattcttattttattgatc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
55345878 |
tgggttcaaattattgtttccatgttgttctttagtactggggttgtgatttgttgttgatggctatgaatttatgagcttcattcttattttattgatc |
55345977 |
T |
|
| Q |
200 |
aaaataacaagaggatgagagaagaatttttgggtttcat |
239 |
Q |
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| T |
55345978 |
aaaataacaagaggatgagagaagaatttgtgggtttcat |
55346017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 38456265 - 38456406
Alignment:
| Q |
101 |
gggttcaaattattgtttccatgttgttctttagtactggggttgtgatttgttgttgatggt-tatgaatttatgagcttcattctt--attttattga |
197 |
Q |
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| T |
38456265 |
gggttcaaactattgtttccatgttgttcttcagtacccgtgttgtggtttgttgttgctgggctatgaattcatgagcttcattttttaatttttttta |
38456364 |
T |
|
| Q |
198 |
tcaaaataacaagaggatgagagaagaatttttgggtttcat |
239 |
Q |
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| T |
38456365 |
tcaaaataacaagaggatgagagaagaatttatgggtttcat |
38456406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 38456136 - 38456188
Alignment:
| Q |
23 |
tggttgtaacaacgaattgaaacgacgagatctagttttatggtgagaacccc |
75 |
Q |
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| T |
38456136 |
tggttgtaacaatgaattgaaaccacgagatctgaatttatggtgagaacccc |
38456188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 43824591 - 43824530
Alignment:
| Q |
168 |
aatttatgagcttcattcttattttattgatcaaaataacaagaggatgagagaagaatttttggg |
233 |
Q |
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| T |
43824591 |
aatttatgagcttcatttttcttttat----caaaacaacaagaggataagagaagaatttttggg |
43824530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 11087911 - 11087953
Alignment:
| Q |
197 |
atcaaaataacaagaggatgagagaagaatttttgggtttcat |
239 |
Q |
| |
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| T |
11087911 |
atcaaaacaacaagaggataagagaagaatttttggggttcat |
11087953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 30722977 - 30723019
Alignment:
| Q |
197 |
atcaaaataacaagaggatgagagaagaatttttgggtttcat |
239 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||| ||||| |
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| T |
30722977 |
atcaaaacaacaagaggataagagaagaatttttggggttcat |
30723019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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