View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15115_low_13 (Length: 242)

Name: NF15115_low_13
Description: NF15115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15115_low_13
NF15115_low_13
[»] chr3 (1 HSPs)
chr3 (78-211)||(1153923-1154056)
[»] chr5 (11 HSPs)
chr5 (22-199)||(35386201-35386378)
chr5 (22-199)||(35410862-35411039)
chr5 (22-199)||(35755003-35755180)
chr5 (22-199)||(35367049-35367226)
chr5 (22-190)||(35376610-35376778)
chr5 (22-190)||(35423869-35424037)
chr5 (98-144)||(35437257-35437303)
chr5 (98-142)||(10716903-10716947)
chr5 (98-142)||(10746978-10747022)
chr5 (98-142)||(10740662-10740706)
chr5 (98-142)||(10763096-10763140)
[»] chr1 (3 HSPs)
chr1 (22-199)||(10415511-10415688)
chr1 (22-199)||(10420398-10420575)
chr1 (22-130)||(10409814-10409922)
[»] chr7 (1 HSPs)
chr7 (63-199)||(29622993-29623129)
[»] chr2 (3 HSPs)
chr2 (46-199)||(30663211-30663364)
chr2 (46-199)||(30671891-30672044)
chr2 (46-199)||(30626260-30626413)
[»] chr8 (2 HSPs)
chr8 (17-91)||(15294046-15294120)
chr8 (17-91)||(15474415-15474489)
[»] chr6 (2 HSPs)
chr6 (98-142)||(12899772-12899816)
chr6 (98-142)||(12958280-12958324)
[»] scaffold0692 (1 HSPs)
scaffold0692 (98-142)||(7495-7539)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 1154056 - 1153923
Alignment:
Q  78 gtctcccaagtgggctacattgtcatcatcaagaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatca 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1154056 gtctcccaagtgggctacattgtcatcatcaagaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatca 1153957  T
Q  178 agtgcatgagctatatcaagagaataatctaccc 211  Q
    |||||||||||||||||||||| | |||||||||    
T  1153956 agtgcatgagctatatcaagagcaaaatctaccc 1153923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 35386378 - 35386201
Alignment:
Q  22 acttgatctttacttgaatgctcggtggctccaagaataatcctagctaaaccaaagtctcccaagtgggctacattgtcatcatcaagaagaacattgc 121  Q
    ||||||||||||||||||||||| |||| ||||||||| |||||||| || ||||||||||||||||||||||||  |||||| ||||||||||| ||||    
T  35386378 acttgatctttacttgaatgctctgtggttccaagaatgatcctagccaagccaaagtctcccaagtgggctacaaagtcatcgtcaagaagaacgttgc 35386279  T
Q  122 ttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagag 199  Q
    ||||||||| |||||||||||||    |||||| |||||||||||||||| |||||||||||||||||| ||||||||    
T  35386278 ttggcttaagatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctacatcaagag 35386201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 35411039 - 35410862
Alignment:
Q  22 acttgatctttacttgaatgctcggtggctccaagaataatcctagctaaaccaaagtctcccaagtgggctacattgtcatcatcaagaagaacattgc 121  Q
    ||||||||||||||||||||||| |||| ||||||||| | |||||| || ||||||||||||||||||||||||  |||||| ||||||||||| ||||    
T  35411039 acttgatctttacttgaatgctctgtggttccaagaatgagcctagccaagccaaagtctcccaagtgggctacaaagtcatcgtcaagaagaacgttgc 35410940  T
Q  122 ttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagag 199  Q
    | ||||||| |||||||||||||  | |||||| ||| |||||||||||| |||||||||||||||||| ||||||||    
T  35410939 tcggcttaagatcacagtgaactacagcttgctctgtctcattgtgaagataatcaagtgcatgagctacatcaagag 35410862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 35755180 - 35755003
Alignment:
Q  22 acttgatctttacttgaatgctcggtggctccaagaataatcctagctaaaccaaagtctcccaagtgggctacattgtcatcatcaagaagaacattgc 121  Q
    |||||||||||||||||||| || || |||||| |||| | ||||||||  |||||||||||||||||||||||| | ||||||||||||||||||||||    
T  35755180 acttgatctttacttgaatgttctgtagctccatgaatgagcctagctaggccaaagtctcccaagtgggctacaatttcatcatcaagaagaacattgc 35755081  T
Q  122 ttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagag 199  Q
    |||||||||||||||||||||||   ||||| | |||||||||||||||| |||| | ||||||||||| ||||||||    
T  35755080 ttggcttaatatcacagtgaactacgacttgttctgtatcattgtgaagataatccaatgcatgagctacatcaagag 35755003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 35367226 - 35367049
Alignment:
Q  22 acttgatctttacttgaatgctcggtggctccaagaataatcctagctaaaccaaagtctcccaagtgggctacattgtcatcatcaagaagaacattgc 121  Q
    |||||||||||||||||||| ||  ||| ||||||||| | ||||||||| |||||||||||||||||||||||| ||||||| || |||||||| ||||    
T  35367226 acttgatctttacttgaatggtctctggttccaagaatgagcctagctaagccaaagtctcccaagtgggctacagtgtcatcgtccagaagaacgttgc 35367127  T
Q  122 ttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagag 199  Q
    | ||||||||||||||||||||| |   || || |||| ||||||||||| |||| ||||||||||||| ||||||||    
T  35367126 tcggcttaatatcacagtgaactatggatttctctgtaccattgtgaagataatcgagtgcatgagctacatcaagag 35367049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 35376778 - 35376610
Alignment:
Q  22 acttgatctttacttgaatgctcggtggctccaagaataatcctagctaaaccaaagtctcccaagtgggctacattgtcatcatcaagaagaacattgc 121  Q
    ||||||| |||||||||||  || || |||||| | |  | ||||||||| ||||||||||| |||||||| |||  |||||||||||||||||||||||    
T  35376778 acttgatttttacttgaatattctgtagctccatggaggaacctagctaagccaaagtctcctaagtgggccacaccgtcatcatcaagaagaacattgc 35376679  T
Q  122 ttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagcta 190  Q
    ||||||||| |||||| ||||||  |||||||| |||||||||||||||| |||| | |||||||||||    
T  35376678 ttggcttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagcta 35376610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 35424037 - 35423869
Alignment:
Q  22 acttgatctttacttgaatgctcggtggctccaagaataatcctagctaaaccaaagtctcccaagtgggctacattgtcatcatcaagaagaacattgc 121  Q
    ||||||| |||||||||||  || || |||||| | |  | ||||||||  ||||||||||| |||||||  |||  |||||||||||||||||||||||    
T  35424037 acttgatttttacttgaatattctgtagctccatggaggaacctagctacgccaaagtctcctaagtgggtcacaccgtcatcatcaagaagaacattgc 35423938  T
Q  122 ttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagcta 190  Q
    |||| |||| |||||| ||||||  |||||||| |||||||||||||||| |||| | |||||||||||    
T  35423937 ttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagcta 35423869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 35437303 - 35437257
Alignment:
Q  98 tgtcatcatcaagaagaacattgcttggcttaatatcacagtgaact 144  Q
    ||||||| || ||||||||||| ||||||||||||||||||||||||    
T  35437303 tgtcatcgtcgagaagaacattacttggcttaatatcacagtgaact 35437257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 10716903 - 10716947
Alignment:
Q  98 tgtcatcatcaagaagaacattgcttggcttaatatcacagtgaa 142  Q
    |||||||||||||||| |||||||||||||||| |||||| ||||    
T  10716903 tgtcatcatcaagaaggacattgcttggcttaagatcacaatgaa 10716947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 10746978 - 10747022
Alignment:
Q  98 tgtcatcatcaagaagaacattgcttggcttaatatcacagtgaa 142  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  10746978 tgtcatcatcaagaaggacattgcttggcttgagatcacagtgaa 10747022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 10740662 - 10740706
Alignment:
Q  98 tgtcatcatcaagaagaacattgcttggcttaatatcacagtgaa 142  Q
    |||||||||||||||| |||||||||||||| | |||||| ||||    
T  10740662 tgtcatcatcaagaaggacattgcttggctttagatcacaatgaa 10740706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 10763096 - 10763140
Alignment:
Q  98 tgtcatcatcaagaagaacattgcttggcttaatatcacagtgaa 142  Q
    |||||||||||||||| |||||||||||||| | |||||| ||||    
T  10763096 tgtcatcatcaagaaggacattgcttggctttagatcacaatgaa 10763140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 10415511 - 10415688
Alignment:
Q  22 acttgatctttacttgaatgctcggtggctccaagaataatcctagctaaaccaaagtctcccaagtgggctacattgtcatcatcaagaagaacattgc 121  Q
    ||||||||||||||||||||||| |||||||||||||| | ||||||||| ||||||||||||||||||||||||  |||||| ||||||||||| ||||    
T  10415511 acttgatctttacttgaatgctctgtggctccaagaatgagcctagctaagccaaagtctcccaagtgggctacaacgtcatcgtcaagaagaacgttgc 10415610  T
Q  122 ttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagag 199  Q
    ||| ||||| |||||||||||||    |||||| |||||||||||||||| |||||||||||||||||| ||||||||    
T  10415611 ttgacttaacatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctagatcaagag 10415688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 10420398 - 10420575
Alignment:
Q  22 acttgatctttacttgaatgctcggtggctccaagaataatcctagctaaaccaaagtctcccaagtgggctacattgtcatcatcaagaagaacattgc 121  Q
    |||||||||||||||||||| ||  ||| ||||||||| | ||||||||| ||||||||||||||||| |||||| ||||||| || |||||||| ||||    
T  10420398 acttgatctttacttgaatggtctctggttccaagaatgagcctagctaagccaaagtctcccaagtgagctacaatgtcatcgtccagaagaacgttgc 10420497  T
Q  122 ttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagag 199  Q
    | ||||||||||||||||||||| |  |||||| |||| ||||||||||| ||| |||||||||||||| ||||||||    
T  10420498 tcggcttaatatcacagtgaactatggcttgctctgtaccattgtgaagataattaagtgcatgagctacatcaagag 10420575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 10409814 - 10409922
Alignment:
Q  22 acttgatctttacttgaatgctcggtggctccaagaataatcctagctaaaccaaagtctcccaagtgggctacattgtcatcatcaagaagaacattgc 121  Q
    |||||||||||||||||||| || || |||||| |||| | ||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  10409814 acttgatctttacttgaatgttctgtagctccacgaattagcctagctaagccaaagtctcctaagtgagctacattgtcatcatcgagaagaacattgc 10409913  T
Q  122 ttggcttaa 130  Q
    |||| ||||    
T  10409914 ttggtttaa 10409922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 63 - 199
Target Start/End: Original strand, 29622993 - 29623129
Alignment:
Q  63 cctagctaaaccaaagtctcccaagtgggctacattgtcatcatcaagaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatca 162  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||  | |||| | | |||||    
T  29622993 cctagctaatccaaagtctcccaagtgggctacaatgtcatcatcaagaagaacattgcttggcttaacatcacagtgaactacagcttgttctatatca 29623092  T
Q  163 ttgtgaagaaaatcaagtgcatgagctatatcaagag 199  Q
    ||||||||| |||| | ||||||||||| ||||||||    
T  29623093 ttgtgaagataatccaatgcatgagctacatcaagag 29623129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 199
Target Start/End: Complemental strand, 30663364 - 30663211
Alignment:
Q  46 gtggctccaagaataatcctagctaaaccaaagtctcccaagtgggctacattgtcatcatcaagaagaacattgcttggcttaatatcacagtgaactg 145  Q
    ||||||||| |||| | ||| || || |||||||||||||||||||||||  ||||||||||||||||||||||| |||| || | |||||||||||||     
T  30663364 gtggctccatgaattaaccttgccaatccaaagtctcccaagtgggctaccatgtcatcatcaagaagaacattgtttggtttcacatcacagtgaacta 30663265  T
Q  146 taacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagag 199  Q
     ||| | ||  ||| ||||||||||| |||| | ||||||||||| ||||||||    
T  30663264 caacattctcagtaccattgtgaagataatccaatgcatgagctacatcaagag 30663211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 199
Target Start/End: Complemental strand, 30672044 - 30671891
Alignment:
Q  46 gtggctccaagaataatcctagctaaaccaaagtctcccaagtgggctacattgtcatcatcaagaagaacattgcttggcttaatatcacagtgaactg 145  Q
    ||||||||| |||| | ||| || || |||||||||||||||||||||||  ||||||||||||||||||||||| |||| || | |||||||||||||     
T  30672044 gtggctccatgaattaaccttgccaatccaaagtctcccaagtgggctaccatgtcatcatcaagaagaacattgtttggtttcacatcacagtgaacta 30671945  T
Q  146 taacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagag 199  Q
     ||| | ||  ||| ||||||||||| |||| | ||||||||||| ||||||||    
T  30671944 caacattctcagtaccattgtgaagataatccaatgcatgagctacatcaagag 30671891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 199
Target Start/End: Complemental strand, 30626413 - 30626260
Alignment:
Q  46 gtggctccaagaataatcctagctaaaccaaagtctcccaagtgggctacattgtcatcatcaagaagaacattgcttggcttaatatcacagtgaactg 145  Q
    ||||||||| |||| | ||| || || |||||||||||||||||||||||  ||||||||||||||||||||||| |||| || | |||||| ||||||     
T  30626413 gtggctccatgaattaaccttgccaatccaaagtctcccaagtgggctaccatgtcatcatcaagaagaacattgtttggtttcacatcacattgaacta 30626314  T
Q  146 taacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagag 199  Q
     ||| | ||  ||| ||||||||||| |||| | ||||||||||| ||||||||    
T  30626313 caacattctcagtaccattgtgaagataatccaatgcatgagctacatcaagag 30626260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 15294120 - 15294046
Alignment:
Q  17 caattacttgatctttacttgaatgctcggtggctccaagaataatcctagctaaaccaaagtctcccaagtggg 91  Q
    |||| |||| ||||||||||||||||||  ||| |||| |||| | |||||| || |||||||||||||||||||    
T  15294120 caataactttatctttacttgaatgctctatggttccatgaatgagcctagccaagccaaagtctcccaagtggg 15294046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 15474489 - 15474415
Alignment:
Q  17 caattacttgatctttacttgaatgctcggtggctccaagaataatcctagctaaaccaaagtctcccaagtggg 91  Q
    |||| |||| ||||||||||||||||||  ||| |||| |||| | |||||| || |||||||||||||||||||    
T  15474489 caataactttatctttacttgaatgctctatggttccatgaatgagcctagccaagccaaagtctcccaagtggg 15474415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 12899816 - 12899772
Alignment:
Q  98 tgtcatcatcaagaagaacattgcttggcttaatatcacagtgaa 142  Q
    |||||||||||||||| |||||||||||||| |||||||| ||||    
T  12899816 tgtcatcatcaagaaggacattgcttggctttatatcacaatgaa 12899772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 12958324 - 12958280
Alignment:
Q  98 tgtcatcatcaagaagaacattgcttggcttaatatcacagtgaa 142  Q
    ||||| |||||||||| |||||||||||||| | |||||||||||    
T  12958324 tgtcaccatcaagaaggacattgcttggctttagatcacagtgaa 12958280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 7539 - 7495
Alignment:
Q  98 tgtcatcatcaagaagaacattgcttggcttaatatcacagtgaa 142  Q
    |||||||||||||||| |||||||||||||| | |||||| ||||    
T  7539 tgtcatcatcaagaaggacattgcttggctttagatcacaatgaa 7495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University