View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15115_low_14 (Length: 236)
Name: NF15115_low_14
Description: NF15115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15115_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 31030978 - 31031121
Alignment:
| Q |
1 |
atttacctaaaaagacactaattaatacgacaaatattgagtaatttgttctagttattc-ttttttaaacaatagtaatttgttttagttggattaaga |
99 |
Q |
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| T |
31030978 |
atttacctaaaaagacactaattaatacgacaaatattgagtaatttgttctagttattctttttttaaacaatagtaatttgttttagttggattaaga |
31031077 |
T |
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| Q |
100 |
atataccacaatgaaaa--ttctgtgaatacagtaaaaggagta |
141 |
Q |
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| T |
31031078 |
atataccacaatgaaaattttctgtgaatacagtaaaaggagta |
31031121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 31021176 - 31021238
Alignment:
| Q |
73 |
tagtaatttgttttagttggattaagaatataccacaatgaaaattctgtgaatacagtaaaa |
135 |
Q |
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| T |
31021176 |
tagtaatttgttttagttggattaagaatataccacaatgaaaattctgtgaatacagtaaaa |
31021238 |
T |
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