View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15115_low_17 (Length: 230)
Name: NF15115_low_17
Description: NF15115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15115_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 37269165 - 37269384
Alignment:
| Q |
1 |
tatataagtctaatgcttcatttttgtctatatcaatagaaaatttgtttgttcaacaagttaccggctgcatacctctcataatcacttaggggaccaa |
100 |
Q |
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| T |
37269165 |
tatataagtctaatgcttcatttttacctatatcgatagaaaatttgtttgttcaacaagttactggctgcatacctctcataatcacttaggggaccaa |
37269264 |
T |
|
| Q |
101 |
gaggaagaaattcctcaactccgttacgg-caagtcgtactattgatccaaagaatggaaattcagttacctacgacagactttgttagtccttaag-aa |
198 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
37269265 |
gaggaagaaattcctcaactccgttacggccaagtcgtactattgatgcaaagaatggcaattcagttacctacgacagactttgttagtccttaagaaa |
37269364 |
T |
|
| Q |
199 |
aagtacttgtttaagcttca |
218 |
Q |
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|||||||| || |||||||| |
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| T |
37269365 |
aagtacttattcaagcttca |
37269384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4987993 - 4988211
Alignment:
| Q |
1 |
tatataagtctaatgcttcatttttgtctatatcaatagaaaatttgtttgttcaacaagttaccggctgcatacctctcataatcacttaggggaccaa |
100 |
Q |
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|
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4987993 |
tatataagtctaatgcttcatttttacctatatcgatagaaaatttgtttgttcaacaagttactggctgcatacctctcataatcacttaggggaccaa |
4988092 |
T |
|
| Q |
101 |
gaggaagaaattcctcaactccgttacgg-caagtcgtactattgatccaaagaatggaaattcagttacctacgacagactttgttagtccttaag-aa |
198 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
4988093 |
gaggaagaaattcctcaactccgttacggccaagtcgtacttttgatgcaaagaatggcaattcagttacctacgacagactttgttagtccttaagaaa |
4988192 |
T |
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| Q |
199 |
aagtacttgtttaagcttc |
217 |
Q |
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||||||||||| ||||||| |
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| T |
4988193 |
aagtacttgttcaagcttc |
4988211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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