View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15115_low_18 (Length: 226)
Name: NF15115_low_18
Description: NF15115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15115_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 3 - 211
Target Start/End: Complemental strand, 39984777 - 39984569
Alignment:
| Q |
3 |
attaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgaggacaccattgaggctgctatccagtggctagatgctaaccagc |
102 |
Q |
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| T |
39984777 |
attaaggatgaaaaaattgcaggaaagcttgattcggatgacaaaaagaagatcgaggacaccattgaggctgctatccagtggctagatgccaaccagc |
39984678 |
T |
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| Q |
103 |
ttgcagaggcggatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtaccaaggtggtgcaggtcctgacat |
202 |
Q |
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| T |
39984677 |
ttgcagaggctgatgagtttgaggacaagatgaaggaacttgaaggtgtctgcaaccctatcattgccaagatgtaccaaggtggtgcaggtcctgacat |
39984578 |
T |
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| Q |
203 |
gggcgctgc |
211 |
Q |
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| T |
39984577 |
gggtgctgc |
39984569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 187
Target Start/End: Complemental strand, 8101759 - 8101614
Alignment:
| Q |
42 |
gacaagaagaagattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcggatgagtttgaggacaagatgaaggaat |
141 |
Q |
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| T |
8101759 |
gacaagaagcagattgaggatgcaattgagggagccattcaatggcttgatgcaaaccagcttgctgaagccgatgagtttgaagacaagatgaaggagc |
8101660 |
T |
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| Q |
142 |
tggaaagtgtctgcaaccctatcattgccaagatgtaccaaggtgg |
187 |
Q |
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| T |
8101659 |
ttgagacaatctgtaacccaatcattgcaaagatgtaccaaggtgg |
8101614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 187
Target Start/End: Original strand, 8018489 - 8018634
Alignment:
| Q |
42 |
gacaagaagaagattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcggatgagtttgaggacaagatgaaggaat |
141 |
Q |
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| T |
8018489 |
gacaaaaagaagattgatgatgcaattgacgctgcaattcagtggttggacagtaaccagttggcagaggctgatgagtttgaagataagatgaaggaac |
8018588 |
T |
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| Q |
142 |
tggaaagtgtctgcaaccctatcattgccaagatgtaccaaggtgg |
187 |
Q |
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| T |
8018589 |
ttgagagcctttgcaacccaatcattgccaagatgtatcaaggtgg |
8018634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 17706713 - 17706911
Alignment:
| Q |
3 |
attaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgaggacaccattgaggctgctatccagtggctagatgctaaccagc |
102 |
Q |
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| T |
17706713 |
attaaggatgaaaagattgcaggaaagcttgattccaaagacaagaaaa---ttgaggacaccattgaggctactatccggtggctagacgccaatcagc |
17706809 |
T |
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| Q |
103 |
ttgcagaggcggatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtaccaaggtggtgcaggtcctgacat |
202 |
Q |
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| T |
17706810 |
ttgcagaggcagatgagtttgaggacaagatgaaggaaccagaaggtgtctgcaaccctatcattgccaagatgtaccaaggtggtgctggtcttggcat |
17706909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 17649347 - 17649544
Alignment:
| Q |
3 |
attaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgaggacaccattgaggctgctatccagtggctagatgctaaccagc |
102 |
Q |
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| T |
17649347 |
attaatgatgaaaagattgcatgaaagcttgattccaaagacaagaaga---ttgaggacaccattgaggctgctatccagtggctagaccc-aaccagc |
17649442 |
T |
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| Q |
103 |
ttgcagaggcggatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtaccaaggtggtgcaggtcctgacat |
202 |
Q |
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| T |
17649443 |
ttgaataggcagatgagtttgaggataagatgaaggaaccgcgaggtgtcggcaaccctatcattgccaagatgtaccaaggtggtgcaggtcttgacat |
17649542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 23597721 - 23597805
Alignment:
| Q |
102 |
cttgcagaggcggatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtaccaaggtg |
186 |
Q |
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| T |
23597721 |
cttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
23597805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 23588869 - 23588953
Alignment:
| Q |
102 |
cttgcagaggcggatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtaccaaggtg |
186 |
Q |
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| T |
23588869 |
cttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatttgcaaccctatcattgcaaggatgtatcaaggtg |
23588953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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