View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15115_low_19 (Length: 224)
Name: NF15115_low_19
Description: NF15115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15115_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 639696 - 639585
Alignment:
| Q |
101 |
agatccacacaaactaaattatacagtttaaataaactatattaatagccaatttaatggccatgaaccattttatttgtttggatagccaaatttgagt |
200 |
Q |
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| T |
639696 |
agatccacacaaactaaattatacagtttaaataaactatattaatagccaatttaatgggcatgaaccatttaatttgtttggatagccaaatttgagt |
639597 |
T |
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| Q |
201 |
taattttgatat |
212 |
Q |
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|||||||||||| |
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| T |
639596 |
taattttgatat |
639585 |
T |
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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 1953 - 2042
Alignment:
| Q |
115 |
taaattatacagtttaaataaactatattaatagccaatttaatggccat-gaaccattttatttgtttggatagccaaatttgagttaa |
203 |
Q |
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||||||||||| | ||||| |||| ||||||||||||||||||| ||| ||||||||| ||||||| |||||||||||| |||||| |
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| T |
1953 |
taaattatacaaatgaaatacactacattaatagccaatttaatgatcatggaaccatttaatttgttcaaatagccaaattttagttaa |
2042 |
T |
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