View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15115_low_2 (Length: 432)
Name: NF15115_low_2
Description: NF15115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15115_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 27115478 - 27115067
Alignment:
| Q |
18 |
agttccaggagaacttgctggtcttcacatggcgtgggaacaacatggtaagcttccatgggagagacttgttaagccagctgagatgattgctcgtaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27115478 |
agttccaggagaacttgctggtcttcacatggcgtgggaacaacatggtaagcttccatgggagagacttgttaagccagctgagatgattgctcgtaat |
27115379 |
T |
|
| Q |
118 |
ggatttagagtatcgaagctcctccgcgatcagatggaacaatcagagactgatataatgaacgacaaaggtcttcgtagtgtgtttgcaccacatggaa |
217 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27115378 |
ggatttagagtatcaaagctcctccgccatcagatggaacaatcagagactgatataatgaacgacaaaggtcttcgtagtgtgtttgcaccacatggaa |
27115279 |
T |
|
| Q |
218 |
aactcttgaatgcaggtgaactattttacaataagaaactaggaaaaactttaagagtaatttctaagtatggtccaaaagctttctatggtggaccaat |
317 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27115278 |
aactcttgaaagtaggtgaactattttacaataagaaactaggaaaaactttaagagtaatttctaagtatggtccaaaagctttctatggtggaccaat |
27115179 |
T |
|
| Q |
318 |
tggcctcaatctagttaaagatgttcagaaggctaaagggatattaaccgtggaagacctcaaaagatacactgttaaaccaaaggaacctatatctata |
417 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27115178 |
tggcctcaacctagttaaagatgttcagaaggctaaagggatattaactgtggaagacctcaaaagatacactgttaaaccaaaggaacctatatctata |
27115079 |
T |
|
| Q |
418 |
gattttcttgga |
429 |
Q |
| |
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|||||||||||| |
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| T |
27115078 |
gattttcttgga |
27115067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 39864194 - 39863783
Alignment:
| Q |
18 |
agttccaggagaacttgctggtcttcacatggcgtgggaacaacatggtaagcttccatgggagagacttgttaagccagctgagatgattgctcgtaat |
117 |
Q |
| |
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||||||||||||||| ||||| ||||||| ||| |||||||||||||| |||||||||||| | |||||||| | |||| ||| ||| ||||| ||| |
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| T |
39864194 |
agttccaggagaactagctggccttcacaaggcatgggaacaacatggaaagcttccatggaatagacttgtaatgccatctgtgattcttgctagtaga |
39864095 |
T |
|
| Q |
118 |
ggatttagagtatcgaagctcctccgcgatcagatggaacaatcagagactgatataatgaacgacaaaggtcttcgtagtgtgtttgcaccacatggaa |
217 |
Q |
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|| |||| | |||| ||| | | ||||||||| || |||| | ||||| |||| |||| |||||| ||||||| |||||||||||||||| |
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| T |
39864094 |
gggtttaaaatatcaccataccttcacatgcagatggaaaaaacagaatcaaatatattgaatgacattggtcttagtagtgtatttgcaccacatggaa |
39863995 |
T |
|
| Q |
218 |
aactcttgaatgcaggtgaactattttacaataagaaactaggaaaaactttaagagtaatttctaagtatggtccaaaagctttctatggtggaccaat |
317 |
Q |
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|||||||||| |||||||| ||| ||| ||||||||||||||| || | ||| || |||| | |||| ||||||| ||||||| ||||||||| ||| |
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| T |
39863994 |
aactcttgaaaccaggtgaaatatgttataataagaaactaggagcaagtctaaaagcaattgcgaagtttggtccacaagctttgtatggtggaataat |
39863895 |
T |
|
| Q |
318 |
tggcctcaatctagttaaagatgttcagaaggctaaagggatattaaccgtggaagacctcaaaagatacactgttaaaccaaaggaacctatatctata |
417 |
Q |
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|||| | ||| |||||||||||||||||||||| |||||||| || ||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
39863894 |
tggcattaatttagttaaagatgttcagaaggccggcgggatattgacattggaagacctcaaaaagtacactgttaaacaaaaggaacctatatctata |
39863795 |
T |
|
| Q |
418 |
gattttcttgga |
429 |
Q |
| |
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|||||||||||| |
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| T |
39863794 |
gattttcttgga |
39863783 |
T |
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