View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15115_low_4 (Length: 405)
Name: NF15115_low_4
Description: NF15115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15115_low_4 |
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| [»] scaffold0059 (3 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 10 - 389
Target Start/End: Original strand, 22607691 - 22608069
Alignment:
| Q |
10 |
caattcaagttcatcttcaccataaataaatcaatggcaaatcttggcatttggttagttttctaaggttctttgatttttcattatatcctcattttca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22607691 |
caattcaagttcatcttcaccataaataaatcaatggcaaatcttgtcattaggttagttttctaagattctttgatttttcattatatcctcattttca |
22607790 |
T |
|
| Q |
110 |
ttttatgttaatttgattcagctcctttgtattgtatgtagatgtagttggatgaaaacatattaatattatacattgtgattccacacccttttttaaa |
209 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22607791 |
ttttatgttgatttgattcagctcgtttgtattgtatgtagatgtagttggatgaaaacatattaatattatacattgtgattccacacccttttttaaa |
22607890 |
T |
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| Q |
210 |
gctctaagttcatgtgaaatggtnnnnnnnnnnntcgttgatgagttgtaggatgaagannnnnnncgatttaatttaactagaaagaaaatgtttatca |
309 |
Q |
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| T |
22607891 |
gctctaagttcatgtgaaatggt-aaaaaaaatatcgttgatgagttgtaggatgaagatttttttcgatttaatttaactaaaaagaaaatgtttatca |
22607989 |
T |
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| Q |
310 |
ctatatctttgattcccaattttccacattgaagtggcgacaaaaaacaacaaatttggatgataaatgcaagaacctat |
389 |
Q |
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| T |
22607990 |
ctatatctttgattcccaaatttccacattgaagtggcgacaaaaaacaacagatttggatgataaatgcaacaacctat |
22608069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 1855 - 2065
Alignment:
| Q |
12 |
attcaagttcatcttcaccataaataaatcaatggcaaatcttggcatttggttagttttctaaggttctttgatttttcattatatcctcattttcatt |
111 |
Q |
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| T |
1855 |
attcaagttcatcttcaccataact----caatggcaaatcttgtcattaagttggttttctaagattctttgatttttcattaaatcctcattttcatt |
1950 |
T |
|
| Q |
112 |
ttatgttaatttgattcagctcctttgtattgtatgtagatgtagttggatgaaaacatattaatattatacattgtgattccacacccttttttaaagc |
211 |
Q |
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|| |||| ||||||||||| |||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1951 |
ttctgttgatttgattcagatcctttttattgtttgtggatgtagttggatgaaaacatattaatattatacattgtgattccatacccttttttaaagc |
2050 |
T |
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| Q |
212 |
tctaagttcatgtga |
226 |
Q |
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|||||||||||||| |
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| T |
2051 |
cctaagttcatgtga |
2065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 7803 - 8015
Alignment:
| Q |
12 |
attcaagttcatcttcaccataaataaatcaatggcaaatcttggcatttggttagttttctaaggttctttgatttttcattatatcctcattttcatt |
111 |
Q |
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||||||||||||||||| ||||| | ||||||||||||||| |||| |||| |||||||||| ||||||| |||||||||| ||| ||||||||||| |
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| T |
7803 |
attcaagttcatcttcatcataact----caatggcaaatcttgtcattaggttggttttctaagattctttggtttttcattaaatcgtcattttcatt |
7898 |
T |
|
| Q |
112 |
ttatgttaatttgattcagctcctttgtattgtatgtagatgtagttggatgaaaacatattaatattatacattgtgattccacacccttttttaaagc |
211 |
Q |
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|| | || ||||||||||||||||||||||||| || |||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| |
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| T |
7899 |
ttctattgatttgattcagctcctttgtattgtttgaggatgtagttggatgaaaacatattaataatctacattgtgattccatgcccttttttaaagc |
7998 |
T |
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| Q |
212 |
tctaagttcatgtgaaa |
228 |
Q |
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||||||||||||||||| |
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| T |
7999 |
tctaagttcatgtgaaa |
8015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 331 - 389
Target Start/End: Original strand, 2210 - 2268
Alignment:
| Q |
331 |
ttccacattgaagtggcgacaaaaaacaacaaatttggatgataaatgcaagaacctat |
389 |
Q |
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|||||||||||||| |||| ||||||||||||||||||| |||| | ||||||||||| |
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| T |
2210 |
ttccacattgaagtagcgataaaaaacaacaaatttggacgatactttcaagaacctat |
2268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 237597 - 237385
Alignment:
| Q |
12 |
attcaagttcatcttcaccataaataaatcaatggcaaatcttggcatttggttagttttctaaggttctttgatttttcattatatcctcattttcatt |
111 |
Q |
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||||||||||||||||| ||||| | ||||||||||||||| |||| |||| |||||||||| ||||||| |||||||||| ||| ||||||||||| |
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| T |
237597 |
attcaagttcatcttcatcataact----caatggcaaatcttgtcattaggttggttttctaagattctttggtttttcattaaatcgtcattttcatt |
237502 |
T |
|
| Q |
112 |
ttatgttaatttgattcagctcctttgtattgtatgtagatgtagttggatgaaaacatattaatattatacattgtgattccacacccttttttaaagc |
211 |
Q |
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|| | || ||||||||||||||||||||||||| || |||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| |
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| T |
237501 |
ttctattgatttgattcagctcctttgtattgtttgaggatgtagttggatgaaaacatattaataatctacattgtgattccatgcccttttttaaagc |
237402 |
T |
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| Q |
212 |
tctaagttcatgtgaaa |
228 |
Q |
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||||||||||||||||| |
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| T |
237401 |
tctaagttcatgtgaaa |
237385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 86 - 211
Target Start/End: Complemental strand, 119164 - 119041
Alignment:
| Q |
86 |
tttttcattatatcctcattttcattttatgttaatttgattcagctcctttgtattgtatgtagatgtagttggatgaaaacatattaatattatacat |
185 |
Q |
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|||||| ||||| ||| ||||||||||| ||| ||||||| ||||||||||||||||| ||| |||| ||| ||| || ||||||||||||||||| || |
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| T |
119164 |
tttttccttataaccttattttcatttt--gttgatttgatccagctcctttgtattgtttgttgatgcagtgggacgataacatattaatattatatat |
119067 |
T |
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| Q |
186 |
tgtgattccacacccttttttaaagc |
211 |
Q |
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|||||||||| ||||||||||||||| |
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| T |
119066 |
tgtgattccatacccttttttaaagc |
119041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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