View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15115_low_6 (Length: 321)
Name: NF15115_low_6
Description: NF15115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15115_low_6 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 31904095 - 31903788
Alignment:
| Q |
14 |
atatgaattacaaagtgtttggaaattgtcaagatgattggagttatgctcagaaattgattttgaaagggtgtgagcctttaccaagaagaaggtgttt |
113 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31904095 |
atatgaattacaaagtatttggaaattgtcaagatgattggagttatgctcagaaattgattttgaaagggtgtgagcctttaccaagaagaaggtgttt |
31903996 |
T |
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| Q |
114 |
tgctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaaacctgttagtaacaaaactgttaattggagtggttttagt |
213 |
Q |
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| T |
31903995 |
tgctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaaacctgttagtaacaaaactgttaattggagtggttttagt |
31903896 |
T |
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| Q |
214 |
tgtaagaattttgagtgtttgaatggtaagaaattgaataggggttgaatgcattgctttgatttggttaatggttatgagaatcaaaggtttgttaagt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31903895 |
tgtaagaattttgagtgtttgaatggtaagaaattgaataggggttgcatgcattgctttgatttggttaatggttatgagaatcaaaggtttgttaagt |
31903796 |
T |
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| Q |
314 |
ctagaagt |
321 |
Q |
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|||||||| |
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| T |
31903795 |
ctagaagt |
31903788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 321
Target Start/End: Original strand, 52953431 - 52953738
Alignment:
| Q |
14 |
atatgaattacaaagtgtttggaaattgtcaagatgattggagttatgctcagaaattgattttgaaagggtgtgagcctttaccaagaagaaggtgttt |
113 |
Q |
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| T |
52953431 |
atatgaattacaaagtgtttggaaattgtcaagatgattggagttttgcacagaaattgatttcgaaaaggtgtgagcctttacctagaagaaggtgttt |
52953530 |
T |
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| Q |
114 |
tgctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaaacctgttagtaacaaaactgttaattggagtggttttagt |
213 |
Q |
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| T |
52953531 |
tgctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagt |
52953630 |
T |
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| Q |
214 |
tgtaagaattttgagtgtttgaatggtaagaaattgaataggggttgaatgcattgctttgatttggttaatggttatgagaatcaaaggtttgttaagt |
313 |
Q |
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| T |
52953631 |
tgtaagaattttgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctttgatttggttaatggatatgagaatcaaaggtttgttaagt |
52953730 |
T |
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| Q |
314 |
ctagaagt |
321 |
Q |
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|||||||| |
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| T |
52953731 |
ctagaagt |
52953738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 143 - 321
Target Start/End: Original strand, 31673573 - 31673751
Alignment:
| Q |
143 |
atcttcatccttttccaacttcactttggaaacctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31673573 |
atcttcatccttttccaacttcactttggaaacctgttagcaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
31673672 |
T |
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| Q |
243 |
gaaattgaataggggttgaatgcattgctttgatttggttaatggttatgagaatcaaaggtttgttaagtctagaagt |
321 |
Q |
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| T |
31673673 |
gaaattgaataggggttgcatgcattgctttgatttggttaatggttatgagaatcaaaggtttgttaagtctagaagt |
31673751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 143 - 302
Target Start/End: Complemental strand, 31922101 - 31921942
Alignment:
| Q |
143 |
atcttcatccttttccaacttcactttggaaacctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31922101 |
atcttcatccttttccaacttcactttggaaacctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
31922002 |
T |
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| Q |
243 |
gaaattgaataggggttgaatgcattgctttgatttggttaatggttatgagaatcaaag |
302 |
Q |
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| T |
31922001 |
gaaattgaataggggttgcatgcattgctttgatttggttaatggttatgagaatcaaag |
31921942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 46 - 288
Target Start/End: Original strand, 7760340 - 7760576
Alignment:
| Q |
46 |
gatgattggagttatgctcagaaattgattttgaaagggtgtgagcctttaccaagaagaaggtgttttgctaaatctgtttcttctaaggtaaattatc |
145 |
Q |
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|||||||||||| ||||||||| |||| || |||||||||||||||||||| ||||||||||||||| | ||| ||||||| || | | | | |
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| T |
7760340 |
gatgattggagtgtagctcagaaactgatcttaaaagggtgtgagcctttacctagaagaaggtgtttttcaaaaactgtttc----aaaatcaggtttt |
7760435 |
T |
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| Q |
146 |
ttcatccttttccaacttcactttggaaacctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaagaa |
245 |
Q |
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|| ||||||||| ||| |||||||| ||| || |||| || ||| |||||||||||||||| | |||||||| |||||| |||||||| || ||||| |
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| T |
7760436 |
tt--tccttttcctgtttctctttggaagcctcttggtaataacacttttaattggagtggtttgaattgtaagagttttgaatgtttgaaaggaaagaa |
7760533 |
T |
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| Q |
246 |
attgaataggggttgaatgcattgctttgatttggttaatggt |
288 |
Q |
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||||| ||| | ||| | |||| ||||||||||||| |||| |
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| T |
7760534 |
attgagtagagattgtgttaattgttttgatttggttagtggt |
7760576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 288
Target Start/End: Original strand, 28959879 - 28959990
Alignment:
| Q |
177 |
tgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaagaaattgaataggggttgaatgcattgctttgat |
276 |
Q |
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|||| |||| || ||| |||||||||||||||| | |||||||| |||||| |||||||| || |||||||||| ||| | ||| | |||| |||||| |
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| T |
28959879 |
tgttggtaataacacttttaattggagtggtttgaattgtaagagttttgaatgtttgaaaggaaagaaattgagtagagattgtgttaattgttttgat |
28959978 |
T |
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| Q |
277 |
ttggttaatggt |
288 |
Q |
| |
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||||||| |||| |
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| T |
28959979 |
ttggttagtggt |
28959990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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