View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15116_high_1 (Length: 724)
Name: NF15116_high_1
Description: NF15116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15116_high_1 |
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| [»] scaffold0133 (3 HSPs) |
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| [»] scaffold0256 (4 HSPs) |
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Alignment Details
Target: scaffold0133 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 12 - 414
Target Start/End: Original strand, 9509 - 9909
Alignment:
| Q |
12 |
atgaatcaaagttgtttggattggagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9509 |
atgaatcaaagttgtttggattggagatgattttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgt |
9608 |
T |
|
| Q |
112 |
agttcttctgcaacatgtcaaaattggctgctatagaaaaataaataattagtgaatgacggtggaaaaaaacaagctgtgaaggcacatggccatnnnn |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||| |
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|
| T |
9609 |
agttcttctgcaacatgtcaaaattggctgctatagaaaaataaataattagtgaatgacagtgggaaaaaacaagtgttgaaggcacatggccat-gaa |
9707 |
T |
|
| Q |
212 |
nnnnnnnnnnnnnnnnttggaaaacttatcttatgaaacaacatcatgctcgttcatttgttcttgtgtggcctagatttcatcaaagagaatccaatac |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9708 |
agggaaaaaaacaaaattggaaaacttatcttatgaaacaacatcatgctcgttcatttgttcttgtgtggcctagatttcatcaaagaaaatccaatac |
9807 |
T |
|
| Q |
312 |
caaataattgtaatactaattattatttaatatttcaagtttggcagtgtacctgaagttcaagtggatcaagtatggtgggatggcatcaagttggcaa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9808 |
caaataattgtaatactaattattatttaatatttcaag-ttggcagtgtacctgaagtgcaagtggatcaagtatggtgggatggcatcaagttggcaa |
9906 |
T |
|
| Q |
412 |
gtg |
414 |
Q |
| |
|
||| |
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|
| T |
9907 |
gtg |
9909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 12 - 427
Target Start/End: Original strand, 13857 - 14261
Alignment:
| Q |
12 |
atgaatcaaagttgtttggattggagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13857 |
atgaatcaaagttgtttggattggagatgattttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgt |
13956 |
T |
|
| Q |
112 |
agttcttctgcaacatgtcaaaattggctgctatagaaaaataaataattagtgaatgacggtggaaaaaaacaagctgtgaaggcacatggccatnnnn |
211 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||| |
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| T |
13957 |
agttcttctccaa---------attggctgctatagaaaaataaataattagtgaatgacagtaggaaaaaacaagttgtgaaggcacatggccatgaaa |
14047 |
T |
|
| Q |
212 |
nnnnnnnnnnnnnnnnttggaaaacttatcttatgaaacaacatcatgctcgttcatttgttcttgtgtggcctagatttcatcaaagagaatccaatac |
311 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
14048 |
aggaaaaaaacaaaa-ttggaaaacttatcatatgaaacaacatcatgaccgttcatttgttcttgtgtggcctagatttcgtcaaagagaatccaatac |
14146 |
T |
|
| Q |
312 |
caaataattgtaatactaattattatttaatatttcaagtttggcagtgtacctgaagttcaagtggatcaagtatggtgggatggcatcaagttggcaa |
411 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
14147 |
caaataattgtaatactaattattatttaatatttcaag-ttggcagtgtacctgaagtgcaagtggatcaagtatggtgggatggtatcaagttggcaa |
14245 |
T |
|
| Q |
412 |
gtgtataatttagctg |
427 |
Q |
| |
|
|||||||||||||||| |
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| T |
14246 |
gtgtataatttagctg |
14261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 469 - 543
Target Start/End: Original strand, 14269 - 14339
Alignment:
| Q |
469 |
ttatctcaaaataataggtatatatccttgcttggcgtctttctttaatactctagacagaacctcaacttttaa |
543 |
Q |
| |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14269 |
ttatctcaaaataataggtat----cctttcttggcgtctttctttaatactctagacagaacctcaacttttaa |
14339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 52 - 385
Target Start/End: Original strand, 10169 - 10497
Alignment:
| Q |
52 |
ggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttctgcaacatgtcaaaattggctgctatagaaaa |
151 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
10169 |
ggaagatgaaatatgcgttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttttgcaacatgtcaaaattgactgctatagaaaa |
10268 |
T |
|
| Q |
152 |
ataaataattagtgaatgacggtggaaaaaaacaagctgtgaaggcacatggccatnnnnnnnnnnnnnnnnnnnnttggaaaacttatcttatgaaaca |
251 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
10269 |
ttaaataattagtgaatgacagtggcaaaaaacaagttgtgaaggcacatggccat-gaaaaggaaaaaaaaaaaattggaaaacttatcttatgtaaca |
10367 |
T |
|
| Q |
252 |
acatcatgctcgttcatttgttcttgtgtggcctagatttcatcaaagagaatccaataccaaataattgtaatactaattattatttaatatttcaagt |
351 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
10368 |
acatcatgcccgttcatttgttcttgtgtggcctagatttcatcaaagagaatccaataccatataattgtaatacta---attatttaatatttcaag- |
10463 |
T |
|
| Q |
352 |
ttggcagtgtacctgaagttcaagtggatcaagt |
385 |
Q |
| |
|
|||||||||||||| |||| |||||||| ||||| |
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| T |
10464 |
ttggcagtgtacctcaagtgcaagtggagcaagt |
10497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 633 - 707
Target Start/End: Original strand, 10721 - 10795
Alignment:
| Q |
633 |
gatgatagtgagtttgtgaagcaaatgcaatgttaagcacaaactcccgtaagcgtctgagaataagacatgtct |
707 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
10721 |
gatgatagtgagtatgtgaagcaaatgcaatgttaagcacaaaatcccgtaagcgtctgagaataggacatgtct |
10795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 462 - 530
Target Start/End: Original strand, 10564 - 10628
Alignment:
| Q |
462 |
ctattgtttatctcaaaataataggtatatatccttgcttggcgtctttctttaatactctagacagaa |
530 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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|
| T |
10564 |
ctattgtttatctcaaaataataggtat----cctttcttggcgtctttctttaatactctagacagaa |
10628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 466
Target Start/End: Original strand, 10492 - 10547
Alignment:
| Q |
408 |
gcaagtgtataatttagctgctgtttggtctggaatatgaaatttcatctatatctatt |
466 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| |
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| T |
10492 |
gcaagtgtataatttagctg---tttggtcaggaatatgaaatttcaactatatctatt |
10547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 1e-55; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 16782107 - 16782253
Alignment:
| Q |
12 |
atgaatcaaagttgtttggattggagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgt |
111 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
16782107 |
atgaatcaaagttgtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatctattaaatcagtggatgt |
16782206 |
T |
|
| Q |
112 |
agttcttctgcaacatgtcaaaattggctgctatagaaaaataaata |
158 |
Q |
| |
|
|||| ||||||||| ||| || ||||| ||||||||||||| ||||| |
|
|
| T |
16782207 |
agtttttctgcaacttgtgaatattggttgctatagaaaaaaaaata |
16782253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 268 - 335
Target Start/End: Complemental strand, 16876065 - 16875998
Alignment:
| Q |
268 |
tttgttcttgtgtggcctagatttcatcaaagagaatccaataccaaataattgtaatactaattatt |
335 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||| | |||||||| |||||||||||||| |
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|
| T |
16876065 |
tttgttcttgtgtggcctagatttcaccggagagaatccagtcacaaataatattaatactaattatt |
16875998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 16867150 - 16867041
Alignment:
| Q |
25 |
gtttggattggagat-gactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttctgca |
123 |
Q |
| |
|
|||||| |||||||| ||||||||| | ||||| |||| |||| ||||||||||||||||| | |||| |||||| || |||| || |||||| |||| |
|
|
| T |
16867150 |
gtttggtttggagatagactttgcttttggaagttgaa-tatgctttgttatttgttttcaagggttatttattaactcggtggttgcagttctgatgca |
16867052 |
T |
|
| Q |
124 |
acatgtcaaaa |
134 |
Q |
| |
|
|| |||||||| |
|
|
| T |
16867051 |
acttgtcaaaa |
16867041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 38938502 - 38938380
Alignment:
| Q |
25 |
gtttggattggagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttctgcaa |
124 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||||||||| | ||||||||||||||||||||||||||||||| |
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|
| T |
38938502 |
gtttggattggagatg-ctttgctctaggaagatgaaatatgtgtagttattttttttcaaagattgtctattaaatcagtggatgtagttcttctgcaa |
38938404 |
T |
|
| Q |
125 |
catgtcaaaattggctgctataga |
148 |
Q |
| |
|
| |||||| |||||||||| |||| |
|
|
| T |
38938403 |
cttgtcaatattggctgctgtaga |
38938380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 11983167 - 11983113
Alignment:
| Q |
25 |
gtttggattggagatgactttgctctaggaagatgaaatatgagttgttatttgt |
79 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| |
|
|
| T |
11983167 |
gtttggattggagatgactttgctctatgaagatgaaatatgcgttattatttgt |
11983113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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