View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15116_high_3 (Length: 640)
Name: NF15116_high_3
Description: NF15116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15116_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 8 - 626
Target Start/End: Complemental strand, 18930606 - 18930006
Alignment:
| Q |
8 |
gattctactcggagagtgaccagaagaacaacaattgatgaacttctgcccattggtacatcgcctctattgtctgtcatttttccagaagacaatgaag |
107 |
Q |
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||||| |||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18930606 |
gattcgactcggagagtgaccagaagaaaagaaattgatgaacttcctcccattggtacatcgcctctattgtctgtcatttttccagaagacaatgaag |
18930507 |
T |
|
| Q |
108 |
aagtcatattggagtaccgtaaaattatagctgaagattttctcagagctaatccaaattacatatttccaactgttcggtatgaagactatgacgagga |
207 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18930506 |
aagtcatattggagtaccgtaaaattatagccgaagattttctcagagctaatccaaattacatatttccaactgttcggtatgaagactatgacgagga |
18930407 |
T |
|
| Q |
208 |
caacaaagatatagtaaaggagtatatgaagaagatggaagaagaaaaagcacaggaaactactgccatcactgctcctgagtcaaagaagagatcagca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||| | |
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| T |
18930406 |
caacaaagatatagtaaaggagtatatgaagaagatggaagaagaaaaagcata------------------tgcacctgagtcaaagaagagatcagta |
18930325 |
T |
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| Q |
308 |
tctttaagtaatcaagtgccttccaagaaatctaaggtattagacgatgatgcatcttcatttggtattcctaaggaacctcttcagtcttatcgtcgtg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| | |
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| T |
18930324 |
tctttaagtaatcaagtgccttccaagaaatctaaggtattagacgatgatgcatcttcatttagtattcctaaggaacctcttcagtttgatcgtccta |
18930225 |
T |
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| Q |
408 |
caacttctagatcgtctgctgtagtcacaagggaagaaactctcgaaaattgttcaacggcgacaagagttgatagcttttatggatacatcaaatcaga |
507 |
Q |
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| T |
18930224 |
caacttctagaacttctgctgtagtcacaagggaagaaactctcaaaaattgttcaacggcgacaagagttgatagcttttatggatacatcaaatcaga |
18930125 |
T |
|
| Q |
508 |
gacatgcggatacaactgatgttatcaagaaccttaccagtttggtccggaagatcttagagaaaccttaggattattttttaattgtatgctgttttta |
607 |
Q |
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| T |
18930124 |
gacatgcggatacaactgattttatcaagaaccttaccagtttggtccagaagatcttagagaaaccttaggattattttttaattgtatgctgttttta |
18930025 |
T |
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| Q |
608 |
ggttttcttttgtgatgac |
626 |
Q |
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||||||||||||||||||| |
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| T |
18930024 |
ggttttcttttgtgatgac |
18930006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 359
Target Start/End: Complemental strand, 36844917 - 36844566
Alignment:
| Q |
8 |
gattctactcggagagtgaccagaagaacaacaattgatgaacttctgcccattggtacatcgcctctattgtctgtcatttttccagaagacaatgaag |
107 |
Q |
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||||||||||||| |||||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
36844917 |
gattctactcggaaagtgaccagaagaacagcaattggtgaacttccacctattggtacatcgcctctattgtctgtcatttttccagaagacagtgagg |
36844818 |
T |
|
| Q |
108 |
aagtcatattggagtaccgtaaaattatagctgaagattttctcagagctaatccaaattacatatttccaactgttcggtatgaagactatgacgagga |
207 |
Q |
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| T |
36844817 |
aagtcatattggagtaccgtaaaattatagctgaagattttctcagagcaaatccaaattacatatctccaactgttcggtatgaagattacgatgagga |
36844718 |
T |
|
| Q |
208 |
caacaaagatatagtaaaggagtatatgaagaagatggaagaagaaaaagcacaggaaactactgccatcactgctcctgagtcaaagaagagatcagca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
36844717 |
caacaaagatatagtaaaggagtatatgaagaagatggaagaagaaatagcacaggaagctagtgctatcactgctcctgagtcaaagaagagatcagca |
36844618 |
T |
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| Q |
308 |
tctttaagtaatcaagtgccttccaagaaatctaaggtattagacgatgatg |
359 |
Q |
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| T |
36844617 |
cctttaagtaatcaagtgccttccaagaaatctaaggtattagatgatgatg |
36844566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 358 - 626
Target Start/End: Complemental strand, 36844540 - 36844281
Alignment:
| Q |
358 |
tgcatcttcatttggtattcctaaggaacctcttcagtcttatcgtcgtgcaacttctagatcgtctgctgtagtcacaagggaagaaactctcgaaaat |
457 |
Q |
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||||||||||||||||||||||||||||||| |||||| | |||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||| |
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| T |
36844540 |
tgcatcttcatttggtattcctaaggaacctattcagtttgatcgtcccgcaacttctagatcttctgttgtagtcacaagggaagaaactctcaaaaat |
36844441 |
T |
|
| Q |
458 |
tgttcaacggcgacaagagttgatagcttttatggatacatcaaatcagagacatgcggatacaactgatgttatcaagaaccttaccagtttggtccgg |
557 |
Q |
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|||||||| || ||||||||| |||||| |||||||||| |||||||| |||||||||||||||||||||||||||||| ||||| ||| | |
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| T |
36844440 |
tgttcaactgcaacaagagtt---------tatggaaacatcaaatcggagacatgtggatacaactgatgttatcaagaaccttactagtttcatccag |
36844350 |
T |
|
| Q |
558 |
aagatcttagagaaaccttaggattattttttaattgtatgctgtttttaggttttcttttgtgatgac |
626 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||| |
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| T |
36844349 |
aagatcttagacaaaccttaggattattttttaattgtacgtagttattaggttttcttttgtgatgac |
36844281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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