View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15116_high_6 (Length: 492)

Name: NF15116_high_6
Description: NF15116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15116_high_6
NF15116_high_6
[»] chr6 (4 HSPs)
chr6 (7-476)||(19007186-19007657)
chr6 (7-275)||(22620843-22621110)
chr6 (207-275)||(11233458-11233526)
chr6 (224-275)||(8671080-8671131)
[»] chr3 (3 HSPs)
chr3 (7-275)||(20010742-20010997)
chr3 (386-460)||(10814018-10814092)
chr3 (224-275)||(18558465-18558516)
[»] chr8 (5 HSPs)
chr8 (7-188)||(25555832-25556013)
chr8 (334-460)||(17534930-17535056)
chr8 (224-275)||(36283220-36283271)
chr8 (224-275)||(3301386-3301437)
chr8 (224-271)||(26907176-26907223)
[»] chr4 (1 HSPs)
chr4 (334-477)||(27787385-27787528)
[»] chr5 (3 HSPs)
chr5 (207-275)||(40934461-40934529)
chr5 (224-275)||(40571379-40571430)
chr5 (224-275)||(38838367-38838418)
[»] chr1 (2 HSPs)
chr1 (224-275)||(19912886-19912937)
chr1 (224-275)||(24279539-24279590)
[»] chr2 (1 HSPs)
chr2 (231-275)||(8166192-8166236)


Alignment Details
Target: chr6 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 7 - 476
Target Start/End: Complemental strand, 19007657 - 19007186
Alignment:
Q  7 aatatattaggatctattgttattgtttattg--aaatatgaagatgaaaaagctaatgagacattaatctaaacaagcttcgctatttgattttctaaa 104  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19007657 aatatattaggatctattgttattgtttattgtgaaatatgaagatgaaaaagttaatgagacattaatctaaacaagcttcgctatttgattttctaaa 19007558  T
Q  105 tttatgataacaggatatcaatgtcaatatttttctcttaacattccaatgttctctaacaaactttatcagtaaatataaatgccaatgcctaagaacc 204  Q
    ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19007557 tttgtgataacaggatttcaatgtcaatatttttctcttaacattccaatgttctctaacaaactttatcagtaaatataaatgtcaatgcctaagaacc 19007458  T
Q  205 aggtactcggatgaacactccaagggaacactgcacaaccgtaacaacgtcactcgagactcagagagaaatctataggatggagcggtttagcgatgga 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19007457 aggtactcggatgaacactccaagggaacactgcacaaccgtaacaacgtcactcgagactcagagagaaatctataggatggagtggtttagcgatgga 19007358  T
Q  305 atcatcccttgacacgtgatgttataactaaagttgctattgcctgccagcagttagctacatatcattagatttaaaattaatggcacccagcatatga 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19007357 atcatcccttgacacgtgatgttataactaaagttgctattgcctgccagcagttagctacatatcattagatttaaaattaatggcacccatcatatga 19007258  T
Q  405 tgaatacaagtgatgttataactaaagaaaatatcaagttgagcatagtgcaggaattatacaagatcataa 476  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||    
T  19007257 tgaatacaagtgatgttataactaaagaaaataccaagttgagcattgtgcaggaattatacaggatcataa 19007186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 275
Target Start/End: Complemental strand, 22621110 - 22620843
Alignment:
Q  7 aatatattaggatctattgttattgtttattgaaatatgaagatgaaaaagctaatgagacattaatctaaacaagcttcgctatttgattttctaaatt 106  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22621110 aatatattaggctctattgttattgtttattgaaatatgaagatgaaaaagttaacgagacattaatctaaacaagcttcgctatttgattttctaaatt 22621011  T
Q  107 tatgataacaggatatcaatgtcaatatttttctcttaacattccaatgttctctaacaaactttatcagtaaatataaatgccaatgcctaagaaccag 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||    
T  22621010 tatgataacaggatatcagtgtcaatatttttctcttaacattccaatgttctctaacaaactttatcagtaagtataaatgtcaatgcctaaaaaccag 22620911  T
Q  207 gtactcggatgaacactccaagggaacactgcacaaccgtaacaacgtcactcgagactcagagagaaa 275  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  22620910 gtactcggatgaacactccaa-ggaacactgcacaaccgtaacaacatcactcgagactcagagagaaa 22620843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 11233458 - 11233526
Alignment:
Q  207 gtactcggatgaacactccaagggaacactgcacaaccgtaacaacgtcactcgagactcagagagaaa 275  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11233458 gtactcggacgaacactccaagggaacactgcacaaccgtaacaacgtcattcgagactcagagagaaa 11233526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 8671080 - 8671131
Alignment:
Q  224 ccaagggaacactgcacaaccgtaacaacgtcactcgagactcagagagaaa 275  Q
    ||||||||||||| |||||||||||||||||| |||| |||||| |||||||    
T  8671080 ccaagggaacactacacaaccgtaacaacgtctctcgtgactcaaagagaaa 8671131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 275
Target Start/End: Complemental strand, 20010997 - 20010742
Alignment:
Q  7 aatatattaggatctattgttattgtttattgaaatatgaagatgaaaaagctaatgagacattaatctaaacaagcttcgctatttgattttctaaatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20010997 aatatattaggatctattgttattgtttattgaaatatgaagatgaaaaagttaacgagacattaatctaaacaagcttcgctatttgattttctaaatt 20010898  T
Q  107 tatgataacaggatatcaatgtcaatatttttctcttaacattccaatgttctctaacaaactttatcagtaaatataaatgccaatgcctaagaaccag 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||    
T  20010897 tatgataacaggatatcagtgtcaatatttttctcttaacattccaatgttctctaacaaactttatcagtaagtataaatgtcaatgcctaaaaaccag 20010798  T
Q  207 gtactcggatgaacactccaagggaacactgcacaaccgtaacaacgtcactcgagactcagagagaaa 275  Q
    ||            ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  20010797 gt------------actccaa-ggaacactgcacaaccgtaacaacatcactcgagactcagagagaaa 20010742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 386 - 460
Target Start/End: Complemental strand, 10814092 - 10814018
Alignment:
Q  386 aatggcacccagcatatgatgaatacaagtgatgttataactaaagaaaatatcaagttgagcatagtgcaggaa 460  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  10814092 aatggcacacaacatatgatgaatacaagtgatgttataactaaagaaagtaccaagttgagcatagtgcaggaa 10814018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 18558465 - 18558516
Alignment:
Q  224 ccaagggaacactgcacaaccgtaacaacgtcactcgagactcagagagaaa 275  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18558465 ccaagggaacactgcacacccgtaacaacgtcactcgagactcagagagaaa 18558516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 25555832 - 25556013
Alignment:
Q  7 aatatattaggatctattgttattgtttattgaaatatgaagatgaaaaagctaatgagacattaatctaaacaagcttcgctatttgattttctaaatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25555832 aatatattaggatctattgttattgtttattgaaatatgaagaggaaaaagttaacgagacattaatctaaacaagcttcgctatttgattttctaaatt 25555931  T
Q  107 tatgataacaggatatcaatgtcaatatttttctcttaacattccaatgttctctaacaaactttatcagtaaatataaatg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25555932 tatgataacaggatatcaatgtcaatatttttctcttaacattccaatgttctctaacaaactttatcagtaagtataaatg 25556013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 334 - 460
Target Start/End: Complemental strand, 17535056 - 17534930
Alignment:
Q  334 aaagttgctattgcctgccagcagtt-agctacatatcattagatttaaaattaatggcacccagcatatgatgaatacaagtgatgttataactaaaga 432  Q
    |||||||||||| ||||| ||||||| |||| ||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  17535056 aaagttgctattacctgctagcagtttagctgcatatcattagatctaaa-ttaatggcacccaacatatgatgaatacaagtgatgttatatctaaaga 17534958  T
Q  433 aaatatcaagttgagcatagtgcaggaa 460  Q
    || || ||||||||||| ||||||||||    
T  17534957 aagtaccaagttgagcacagtgcaggaa 17534930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 36283271 - 36283220
Alignment:
Q  224 ccaagggaacactgcacaaccgtaacaacgtcactcgagactcagagagaaa 275  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36283271 ccaagggaacactgcacaaccgtaacaatgtcactcgagactcagagagaaa 36283220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 3301386 - 3301437
Alignment:
Q  224 ccaagggaacactgcacaaccgtaacaacgtcactcgagactcagagagaaa 275  Q
    ||||||||||||||||||||||||||||| || |||| ||||||||||||||    
T  3301386 ccaagggaacactgcacaaccgtaacaacatctctcgtgactcagagagaaa 3301437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 26907223 - 26907176
Alignment:
Q  224 ccaagggaacactgcacaaccgtaacaacgtcactcgagactcagaga 271  Q
    |||||||||||||||||||||||||||||||| |||  ||||||||||    
T  26907223 ccaagggaacactgcacaaccgtaacaacgtctctcatgactcagaga 26907176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 334 - 477
Target Start/End: Original strand, 27787385 - 27787528
Alignment:
Q  334 aaagttgctattgcctgccagcagttagctacatatcattagatttaaaattaatggcacccagcatatgatgaatacaagtgatgttataactaaagaa 433  Q
    |||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27787385 aaagttgctattgcctgctagcagttagctgcttatcattagatttaaaattaatggcacccatcatatgatgaatacaagtgatgttataactaaagaa 27787484  T
Q  434 aatatcaagttgagcatagtgcaggaattatacaagatcataac 477  Q
    |||| ||||||||||||||||||||||||||||| |||||||||    
T  27787485 aataccaagttgagcatagtgcaggaattatacaggatcataac 27787528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 40934461 - 40934529
Alignment:
Q  207 gtactcggatgaacactccaagggaacactgcacaaccgtaacaacgtcactcgagactcagagagaaa 275  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  40934461 gtactcggatgaacactccaaggaaacactgcacaaccgtaacaacgtcactcgagacttagagagaaa 40934529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 40571430 - 40571379
Alignment:
Q  224 ccaagggaacactgcacaaccgtaacaacgtcactcgagactcagagagaaa 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40571430 ccaagggaacactgcacaaccgtaacaacgtcactcgagactcagagagaaa 40571379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 38838367 - 38838418
Alignment:
Q  224 ccaagggaacactgcacaaccgtaacaacgtcactcgagactcagagagaaa 275  Q
    ||||||||||||||| |||||||||||||||| |||| |||||||| |||||    
T  38838367 ccaagggaacactgcgcaaccgtaacaacgtctctcgtgactcagaaagaaa 38838418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 19912937 - 19912886
Alignment:
Q  224 ccaagggaacactgcacaaccgtaacaacgtcactcgagactcagagagaaa 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19912937 ccaagggaacactgcacaaccgtaacaacgtcactcgagactcagagagaaa 19912886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 24279590 - 24279539
Alignment:
Q  224 ccaagggaacactgcacaaccgtaacaacgtcactcgagactcagagagaaa 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24279590 ccaagggaacactgcacaaccgtaacaacgtcactcgagactcagagagaaa 24279539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 8166192 - 8166236
Alignment:
Q  231 aacactgcacaaccgtaacaacgtcactcgagactcagagagaaa 275  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  8166192 aacactgcacaaccgtaacaacgtcactcgagagtcagagagaaa 8166236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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