View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15116_low_11 (Length: 356)
Name: NF15116_low_11
Description: NF15116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15116_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 23 - 338
Target Start/End: Complemental strand, 49276049 - 49275734
Alignment:
| Q |
23 |
tgattcatcacaatgccatcctttttcaacgttagacgaccatatccacaatacttctaggaaaagaaattagagttatgaatgttagaaccttcatgcc |
122 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49276049 |
tgattcatcacaataccaccctttttcaacgttagacgaccatatccacaatacttctaggaaaagaaattagagttatgaatgttagaaccttcatgcc |
49275950 |
T |
|
| Q |
123 |
aaagcaacctcttcgaaggcaaattatgagaaaaggaaactccttggcaaattatgagtcataattttttatttgttaaactgattgattctagatttta |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49275949 |
aaagcaacctcttcgaaggcaaattatgagaaaaggaaactccttggcaaattatgagtcataattttttatttgttaaactgattgattctagatttta |
49275850 |
T |
|
| Q |
223 |
tgattaacannnnnnnnnnnnaaggaatgattaacatatttatatcttaatttgatactttcttttgcagaccacggtcctattattagagaatgtgatc |
322 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
49275849 |
tgattaacatttttttttttgaaggaatgattaacatatttatatcttaatttgatactttattttgcagaccacggtcctattattaaagaatgtgatc |
49275750 |
T |
|
| Q |
323 |
agctaatcgaatatgt |
338 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
49275749 |
aggtaatcgaatatgt |
49275734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University