View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15116_low_12 (Length: 317)

Name: NF15116_low_12
Description: NF15116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15116_low_12
NF15116_low_12
[»] chr3 (14 HSPs)
chr3 (5-317)||(9338707-9339028)
chr3 (226-308)||(46972147-46972229)
chr3 (227-317)||(5506744-5506834)
chr3 (226-308)||(52166046-52166128)
chr3 (241-317)||(44947148-44947224)
chr3 (226-308)||(52858010-52858093)
chr3 (227-308)||(12063683-12063765)
chr3 (203-257)||(22257744-22257798)
chr3 (174-262)||(45368670-45368760)
chr3 (174-257)||(193457-193542)
chr3 (203-257)||(612143-612197)
chr3 (174-259)||(39719413-39719500)
chr3 (174-266)||(29203025-29203119)
chr3 (228-264)||(51003363-51003399)
[»] chr1 (11 HSPs)
chr1 (226-308)||(34319506-34319588)
chr1 (203-307)||(52703048-52703152)
chr1 (226-317)||(7781091-7781182)
chr1 (203-317)||(41004920-41005034)
chr1 (253-317)||(46056360-46056424)
chr1 (203-266)||(16085589-16085652)
chr1 (226-317)||(3391237-3391328)
chr1 (226-317)||(33152011-33152102)
chr1 (206-264)||(36379126-36379184)
chr1 (203-268)||(3661039-3661104)
chr1 (174-269)||(5697540-5697637)
[»] chr4 (20 HSPs)
chr4 (226-317)||(24954164-24954255)
chr4 (226-308)||(22892638-22892720)
chr4 (226-308)||(22944302-22944384)
chr4 (226-308)||(37970404-37970486)
chr4 (226-308)||(55764669-55764751)
chr4 (226-308)||(56270043-56270125)
chr4 (228-317)||(3932192-3932281)
chr4 (262-317)||(24711791-24711846)
chr4 (259-317)||(24704501-24704559)
chr4 (234-308)||(52713612-52713686)
chr4 (228-317)||(23113419-23113508)
chr4 (226-308)||(35580904-35580979)
chr4 (272-312)||(40497351-40497391)
chr4 (174-317)||(52707942-52708086)
chr4 (226-317)||(21633759-21633850)
chr4 (226-264)||(44442191-44442229)
chr4 (174-257)||(4391711-4391796)
chr4 (174-257)||(25235201-25235286)
chr4 (226-314)||(35190562-35190650)
chr4 (272-308)||(55829153-55829189)
[»] chr7 (12 HSPs)
chr7 (226-308)||(482941-483023)
chr7 (226-308)||(36407342-36407424)
chr7 (226-308)||(43134518-43134600)
chr7 (226-308)||(44596724-44596806)
chr7 (230-317)||(33609079-33609166)
chr7 (162-317)||(791283-791439)
chr7 (174-314)||(1342836-1342978)
chr7 (170-269)||(40893428-40893529)
chr7 (174-266)||(19757517-19757611)
chr7 (226-264)||(21254700-21254738)
chr7 (174-314)||(46879477-46879619)
chr7 (174-269)||(36612109-36612206)
[»] chr5 (13 HSPs)
chr5 (226-308)||(1174897-1174979)
chr5 (226-308)||(3670391-3670473)
chr5 (226-308)||(35236609-35236691)
chr5 (203-308)||(11663833-11663938)
chr5 (226-308)||(30774133-30774216)
chr5 (226-308)||(10697382-10697464)
chr5 (226-314)||(16474884-16474972)
chr5 (272-310)||(11780197-11780235)
chr5 (203-257)||(27005847-27005901)
chr5 (227-269)||(4657582-4657624)
chr5 (172-257)||(11100755-11100842)
chr5 (203-257)||(43402534-43402588)
chr5 (174-257)||(13936251-13936336)
[»] chr2 (14 HSPs)
chr2 (226-308)||(38880730-38880812)
chr2 (226-307)||(23356933-23357014)
chr2 (239-308)||(44275786-44275855)
chr2 (253-317)||(3337198-3337262)
chr2 (227-314)||(25071482-25071569)
chr2 (226-317)||(38842946-38843037)
chr2 (203-307)||(15250193-15250297)
chr2 (272-312)||(40869310-40869350)
chr2 (173-257)||(7823546-7823632)
chr2 (244-308)||(2757301-2757365)
chr2 (239-307)||(4056014-4056082)
chr2 (272-308)||(6760559-6760595)
chr2 (205-257)||(6807483-6807535)
chr2 (272-308)||(41796697-41796733)
[»] chr8 (10 HSPs)
chr8 (226-308)||(37560480-37560562)
chr8 (174-317)||(43849149-43849294)
chr8 (226-308)||(2642370-2642451)
chr8 (162-317)||(8436466-8436622)
chr8 (185-270)||(9370305-9370393)
chr8 (174-317)||(29189668-29189813)
chr8 (203-317)||(39677446-39677560)
chr8 (272-312)||(34395300-34395340)
chr8 (185-257)||(40045470-40045544)
chr8 (272-308)||(9211138-9211174)
[»] chr6 (8 HSPs)
chr6 (226-308)||(7317562-7317644)
chr6 (227-316)||(11443060-11443149)
chr6 (226-317)||(12140821-12140912)
chr6 (173-250)||(26561408-26561487)
chr6 (226-307)||(21894365-21894446)
chr6 (165-257)||(5893896-5893990)
chr6 (241-312)||(27720596-27720666)
chr6 (226-307)||(20563507-20563588)
[»] scaffold1632 (1 HSPs)
scaffold1632 (226-295)||(1-70)
[»] scaffold1360 (1 HSPs)
scaffold1360 (228-317)||(1187-1276)
[»] scaffold0349 (1 HSPs)
scaffold0349 (241-312)||(10015-10085)
[»] scaffold0002 (1 HSPs)
scaffold0002 (174-270)||(119228-119326)
[»] scaffold0418 (1 HSPs)
scaffold0418 (272-312)||(4644-4684)
[»] scaffold0041 (1 HSPs)
scaffold0041 (170-269)||(72755-72856)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 5 - 317
Target Start/End: Complemental strand, 9339028 - 9338707
Alignment:
Q  5 gtataaatcagcaccaacgcctataacacatttcataattagt-aacacatttcatcccggtaacgagtaagtttagctcagttgatcaaggaaatagtt 103  Q
    |||||| || |||||||| |||||||||||||||||||||||| |||||||||||||||||||||   ||||||||||||||||| |||| |||||||||    
T  9339028 gtataagtcggcaccaacacctataacacatttcataattagttaacacatttcatcccggtaaccgataagtttagctcagttggtcaaagaaatagtt 9338929  T
Q  104 tatagtttatgatggatagcgaatagcttattatttggtctgatnnnnnnnnctttgattgataacgatctttttacaacaagcttatagctttatttc- 202  Q
    ||||||||||| |||||| || |||||||||||||||||||| |        ||||| |||||||||||||||||||||| |||||||||| |||||||     
T  9338928 tatagtttatggtggataccgcatagcttattatttggtctggtaaaaaaaactttgtttgataacgatctttttacaacgagcttatagc-ttatttca 9338830  T
Q  203 --agcttataacttattttgtaaatgctatttcaag------tggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatc 294  Q
      ||||||||||||||||| ||||||||||||||||      | || |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9338829 taagcttataacttattttttaaatgctatttcaagtagtgtttgcatttgagcttataacttttaacttatcatcctttgtctcatttttacccttatc 9338730  T
Q  295 actttaactaaaatccattttta 317  Q
    |||||||||||||| ||||||||    
T  9338729 actttaactaaaattcattttta 9338707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 46972147 - 46972229
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||||||||| ||||||||||||||||||| || ||| ||||  |||||||||||||||||||||||| |||||| |||||    
T  46972147 gctatttcaagtagcgtttgagcttatagcttatagcttctcattttttgtctcatttttacccttatcaatttaacaaaaat 46972229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 5506744 - 5506834
Alignment:
Q  227 ctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
    ||||| ||||| ||||||||||||||||||| || ||||||||  ||| |  ||||| |||||||| ||||||||||||||||||| ||||    
T  5506744 ctattacaagtagcgtttgagcttatagcttatagcttatcatgttttattccatttatacccttaccactttaactaaaatccatgttta 5506834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 52166128 - 52166046
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| ||||| || |||||||||||||||| || ||| ||||  ||| |||||||||||||||||||| |||||| |||||    
T  52166128 gctattccaagtagcatttgagcttatagcttatagcttctcattttttatctcatttttacccttatcaatttaacaaaaat 52166046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 44947224 - 44947148
Alignment:
Q  241 gtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
    ||||||||||||||||| || ||||||||| ||| |  ||||||||||||||||| ||||| ||||| ||| |||||    
T  44947224 gtttgagcttatagcttatagcttatcatcttttcttccatttttacccttatcattttaattaaaacccactttta 44947148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 52858010 - 52858093
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatccttt-gtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| |||||  |||||||||||||||||| || ||| ||||  ||| ||||||||||||||||||||| |||||| |||||    
T  52858010 gctattccaagtatcgtttgagcttatagcttatagcttctcatttttttgtctcatttttacccttatcaatttaacaaaaat 52858093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 12063765 - 12063683
Alignment:
Q  227 ctatttcaagtggcgtttgagcttatagcttttaacttatcatccttt-gtctcatttttacccttatcactttaactaaaat 308  Q
    ||||| ||||| ||||||||||||||| ||| || ||| ||||  ||| ||||||||||||||||||||| |||||| |||||    
T  12063765 ctattccaagtagcgtttgagcttatatcttatagcttctcatttttttgtctcatttttacccttatcaatttaacaaaaat 12063683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 22257744 - 22257798
Alignment:
Q  203 agcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagctt 257  Q
    |||||||  ||||||||  |||||||||||||||| |||||||||||||||||||    
T  22257744 agcttattgcttatttttcaaatgctatttcaagtagcgtttgagcttatagctt 22257798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 262
Target Start/End: Original strand, 45368670 - 45368760
Alignment:
Q  174 tttttacaacaagcttatagctttatttcag---cttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaac 262  Q
    ||||||||||||||||||||||| |||||||   |||||||  ||||||  | | |||| ||||||| ||||||||||||||||||| ||||    
T  45368670 tttttacaacaagcttatagctt-atttcaggagcttataagctatttttcagaagctacttcaagtagcgtttgagcttatagcttataac 45368760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 193457 - 193542
Alignment:
Q  174 tttttacaacaagcttatagctttatttc--agcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagctt 257  Q
    |||||||||| ||||||||||||  |||   |||||||||  ||||||  | |||||||| ||||| |||||||||||||||||||    
T  193457 tttttacaacgagcttatagcttattttatgagcttataagctatttttcagatgctattacaagtagcgtttgagcttatagctt 193542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 612143 - 612197
Alignment:
Q  203 agcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagctt 257  Q
    |||||||||||||||||  | | || ||||||||| |||||||||||||||||||    
T  612143 agcttataacttattttccatacgccatttcaagtagcgtttgagcttatagctt 612197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 39719413 - 39719500
Alignment:
Q  174 tttttacaacaagcttatagctttatttc---agcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagctttt 259  Q
    ||||||||||||||||||||| |||||||   ||||||||| ||||| || | | |||||| ||| | ||||||||| |||||||||||    
T  39719413 tttttacaacaagcttatagc-ttatttcacgagcttataagttattatgaagaagctattccaaatagcgtttgagtttatagctttt 39719500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 29203119 - 29203025
Alignment:
Q  174 tttttacaacaagcttatagctttatttca---gcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaacttat 266  Q
    |||||||||| ||||||||| |||||||||   ||||||||  ||||||  | | |||||||||||| || |||||||||||||||| || |||||    
T  29203119 tttttacaacgagcttatag-tttatttcacgagcttataagctatttttcagacgctatttcaagtagcatttgagcttatagcttatagcttat 29203025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 51003363 - 51003399
Alignment:
Q  228 tatttcaagtggcgtttgagcttatagcttttaactt 264  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  51003363 tatttcaagtagcgtttgagcttatagcttataactt 51003399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 34319506 - 34319588
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| ||||| ||||||||||||||||||| |||||| ||||  |||||||||||||||||||||||| |||||| |||||    
T  34319506 gctattccaagtagcgtttgagcttatagcttataacttctcattttttgtctcatttttacccttatcaatttaacaaaaat 34319588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 203 - 307
Target Start/End: Complemental strand, 52703152 - 52703048
Alignment:
Q  203 agcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaac 302  Q
    ||||||||| |||||||  | | |||||||||||| |||||||||||||||||||||| ||| | ||| ||| | |||||||||||||||| | ||||||    
T  52703152 agcttataagttatttttcagaagctatttcaagtagcgtttgagcttatagcttttagctttttatcttttatttcatttttacccttattattttaac 52703053  T
Q  303 taaaa 307  Q
    |||||    
T  52703052 taaaa 52703048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 317
Target Start/End: Complemental strand, 7781182 - 7781091
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
    |||||| ||||| | ||||||||||||||||| || ||||||||| ||| | |||||||||||||||||| ||||| ||||| ||| |||||    
T  7781182 gctattccaagtagtgtttgagcttatagcttatagcttatcatcttttctttcatttttacccttatcattttaattaaaacccactttta 7781091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 317
Target Start/End: Complemental strand, 41005034 - 41004920
Alignment:
Q  203 agcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaac 302  Q
    ||||||||| |||||||  | | |||||||||||| |||||||| |||||||||| || ||| ||||| ||| |  ||||||||||||||| | |||| |    
T  41005034 agcttataagttatttttaagaagctatttcaagtagcgtttgaacttatagcttatagcttctcatcttttcttccatttttacccttattattttatc 41004935  T
Q  303 taaaatccattttta 317  Q
    ||||||||| |||||    
T  41004934 taaaatccaatttta 41004920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 46056424 - 46056360
Alignment:
Q  253 agcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
    ||||| || ||||| ||| ||||| ||||||||||||| |||||||||| |||||||||||||||    
T  46056424 agcttatagcttattatcttttgtttcatttttaccctcatcactttaattaaaatccattttta 46056360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 266
Target Start/End: Complemental strand, 16085652 - 16085589
Alignment:
Q  203 agcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaacttat 266  Q
    |||||||||  ||||||  | |||||||||||||| ||||||||||||||||||| ||||||||    
T  16085652 agcttataagctatttttcagatgctatttcaagtagcgtttgagcttatagcttataacttat 16085589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 317
Target Start/End: Original strand, 3391237 - 3391328
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
    |||||| |||||  ||||| |||||||||||| || ||| ||||  ||| || ||||||||||||||| | ||||| |||||||||| ||||    
T  3391237 gctattccaagtaacgtttaagcttatagcttatagcttctcatattttatcccatttttacccttattattttaattaaaatccatgttta 3391328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 317
Target Start/End: Original strand, 33152011 - 33152102
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
    |||||||||||| |||||||||||| || ||| || ||| ||||| ||| |  ||||||||||||||| | |||| ||||||| || |||||    
T  33152011 gctatttcaagtagcgtttgagcttgtaacttatagcttctcatcttttcttccatttttacccttattattttatctaaaattcaatttta 33152102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 36379184 - 36379126
Alignment:
Q  206 ttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaactt 264  Q
    |||||| |||||||  ||| |||||| ||||| ||||||||||||||||||| ||||||    
T  36379184 ttataagttatttttcaaaagctattccaagtagcgtttgagcttatagcttataactt 36379126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 3661039 - 3661104
Alignment:
Q  203 agcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaacttatca 268  Q
    |||||||||  ||||||  ||| |||||| ||||| ||||||||||||||||||| || |||||||    
T  3661039 agcttataagctatttttcaaaagctattccaagtagcgtttgagcttatagcttatagcttatca 3661104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 269
Target Start/End: Original strand, 5697540 - 5697637
Alignment:
Q  174 tttttacaacaagcttatagctttatttca---gcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaacttatcat 269  Q
    |||||||||  |||||||||||| ||||||   ||||||||  ||||||  | | |||||| ||||| ||||||||||||||| ||| |||||||||||    
T  5697540 tttttacaatgagcttatagctt-atttcacgagcttataagctatttttcagacgctattccaagtagcgtttgagcttataccttataacttatcat 5697637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 226 - 317
Target Start/End: Complemental strand, 24954255 - 24954164
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
    |||||| ||||| ||||||||||||||||||| || ||||||||| |||||  ||||||||||||||||| ||||| ||||| ||| |||||    
T  24954255 gctattccaagtagcgtttgagcttatagcttatagcttatcatcttttgttccatttttacccttatcattttaattaaaacccactttta 24954164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 22892638 - 22892720
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| ||||| ||||||||||||||||||| || ||| ||||  |||||||||||||||||||||||| |||||| |||||    
T  22892638 gctattccaagtagcgtttgagcttatagcttatagcttctcattttttgtctcatttttacccttatcaatttaacaaaaat 22892720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 22944302 - 22944384
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| ||||| ||||||||||||||||||| || ||| ||||  |||||||||||||||||||||||| |||||| |||||    
T  22944302 gctattccaagtagcgtttgagcttatagcttatagcttctcattttttgtctcatttttacccttatcaatttaacaaaaat 22944384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 37970404 - 37970486
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| ||||| ||||||||||||||||||| || ||| ||||  |||||||||||||||||||||||| |||||| |||||    
T  37970404 gctattccaagtagcgtttgagcttatagcttatagcttctcattttttgtctcatttttacccttatcaatttaacaaaaat 37970486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 55764669 - 55764751
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| ||||| ||||||||||||||||||| || ||| ||||  |||||||||||||||||||||||| |||||| |||||    
T  55764669 gctattccaagtagcgtttgagcttatagcttatagcttctcattttttgtctcatttttacccttatcaatttaacaaaaat 55764751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 56270125 - 56270043
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| ||||| |||||||||||| |||||| || ||| ||||  |||||||||||||||||||||||| |||||| |||||    
T  56270125 gctattccaagtagcgtttgagcttttagcttatagcttctcattttttgtctcatttttacccttatcaatttaacaaaaat 56270043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 317
Target Start/End: Complemental strand, 3932281 - 3932192
Alignment:
Q  228 tatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
    |||||||||| || |||||||||||||||| || ||||||||  ||| | |||||||||||||||| | |||| |||||||||| |||||    
T  3932281 tatttcaagtagcatttgagcttatagcttatagcttatcatattttctttcatttttacccttattattttatctaaaatccaatttta 3932192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 24711791 - 24711846
Alignment:
Q  262 cttatcatcctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
    ||||||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  24711791 cttatcatcttttgtctcacttttaccctcatcactttaactaaaattcattttta 24711846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 317
Target Start/End: Original strand, 24704501 - 24704559
Alignment:
Q  259 taacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
    |||||||||||| ||||||||| ||||||| | ||||||||||||||| ||||||||||    
T  24704501 taacttatcatcttttgtctcacttttaccatcatcactttaactaaagtccattttta 24704559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 308
Target Start/End: Original strand, 52713612 - 52713686
Alignment:
Q  234 aagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||| ||||||||||||||||||| |||||| ||||| ||| |  ||||||||||||||| | |||| |||||||    
T  52713612 aagtagcgtttgagcttatagcttataacttctcatcttttcttccatttttacccttattattttatctaaaat 52713686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 317
Target Start/End: Complemental strand, 23113508 - 23113419
Alignment:
Q  228 tatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
    |||| ||||| ||||||||| ||||| ||| |||||| ||||  ||| || ||||||||||||||| | ||||| |||||||||| ||||    
T  23113508 tattccaagtagcgtttgagtttataacttataacttctcatattttatcccatttttacccttattattttaattaaaatccatattta 23113419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 35580979 - 35580904
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||||||||| ||||||||||||||||||| | | ||       |||||||||||||||||||||||| |||||| |||||    
T  35580979 gctatttcaagtagcgtttgagcttatagcttctcattt-------tttgtctcatttttacccttatcaatttaacaaaaat 35580904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 40497391 - 40497351
Alignment:
Q  272 tttgtctcatttttacccttatcactttaactaaaatccat 312  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  40497391 tttgtctcatttttacccttatcaatttaacaaaaatccat 40497351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 317
Target Start/End: Complemental strand, 52708086 - 52707942
Alignment:
Q  174 tttttacaacaagcttatagctttatttca---gcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaacttatcatc 270  Q
    |||||||||| |||||||||||| ||||||   ||||||||  ||||||  | ||| |||| |||||  |||| ||||||||||||| || ||||||||     
T  52708086 tttttacaacgagcttatagctt-atttcacgagcttataaactatttttcagatgttattacaagtaacgtt-gagcttatagcttatatcttatcatg 52707989  T
Q  271 ctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
     ||| |  ||||| |||||||| |||||||||||||| |||| ||||    
T  52707988 ttttattccatttatacccttaccactttaactaaaacccatgttta 52707942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 317
Target Start/End: Complemental strand, 21633850 - 21633759
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
    |||||| ||| | ||||||||||||||||||| || ||||||||| ||| |  ||||| ||||||||| | |||| |||||| ||| |||||    
T  21633850 gctattccaaatagcgtttgagcttatagcttatagcttatcatcttttcttccatttatacccttattattttatctaaaaaccaatttta 21633759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 264
Target Start/End: Original strand, 44442191 - 44442229
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaactt 264  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  44442191 gctatttcaagtagcgtttgagcttatagcttataactt 44442229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 257
Target Start/End: Complemental strand, 4391796 - 4391711
Alignment:
Q  174 tttttacaacaagcttatagctttatttcag---cttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagctt 257  Q
    |||||||||| |||||||||||| |||||||   |||||||  ||||||  | | |||| ||||||| |||||||||||||||||||    
T  4391796 tttttacaacgagcttatagctt-atttcaggagcttataagctatttttcagaagctacttcaagtagcgtttgagcttatagctt 4391711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 25235201 - 25235286
Alignment:
Q  174 tttttacaacaagcttatagctttatttcag---cttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagctt 257  Q
    |||||||||| |||||||||||| |||||||   |||||||  ||||||  | | |||| ||||||| |||||||||||||||||||    
T  25235201 tttttacaacgagcttatagctt-atttcaggagcttataagctatttttcagaagctacttcaagtagcgtttgagcttatagctt 25235286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 314
Target Start/End: Complemental strand, 35190650 - 35190562
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattt 314  Q
    |||| ||||||| ||||||||||||||||||| || ||||||||  ||| |  |||||||| ||||||   |||| |||||| ||||||    
T  35190650 gctacttcaagtagcgtttgagcttatagcttatagcttatcatattttcttccatttttatccttattgatttatctaaaacccattt 35190562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 55829153 - 55829189
Alignment:
Q  272 tttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||||||||||||||||||||| |||||| |||||    
T  55829153 tttgtctcatttttacccttatcaatttaacaaaaat 55829189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 483023 - 482941
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| ||||| ||||||||||||||||||| || ||| ||||  |||||||||||||||||||||||| |||||| |||||    
T  483023 gctattccaagtagcgtttgagcttatagcttatagcttctcattttttgtctcatttttacccttatcaatttaacaaaaat 482941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 36407342 - 36407424
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| ||||| ||||||||||||||||||| || ||| ||||  |||||||||||||||||||||||| |||||| |||||    
T  36407342 gctattccaagtagcgtttgagcttatagcttatagcttctcattttttgtctcatttttacccttatcaatttaacaaaaat 36407424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 43134518 - 43134600
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| ||||| ||||||||||||||| ||| || ||| ||||  |||||||||||||||||||||||| |||||| |||||    
T  43134518 gctattccaagtagcgtttgagcttataacttatagcttctcattttttgtctcatttttacccttatcaatttaacaaaaat 43134600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 44596724 - 44596806
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| ||||| ||||||||||||||||||| || ||| ||||  ||||| |||||||||||||||||| |||||| |||||    
T  44596724 gctattccaagtagcgtttgagcttatagcttatagcttctcattttttgtttcatttttacccttatcaatttaacaaaaat 44596806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 33609166 - 33609079
Alignment:
Q  230 tttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
    |||||||| || ||| |||||||||||| || ||||||||| |||||| ||||||||||||||| | ||||| ||||| |||| ||||    
T  33609166 tttcaagtagcatttaagcttatagcttatagcttatcatcttttgtcccatttttacccttattattttaattaaaacccatgttta 33609079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 317
Target Start/End: Complemental strand, 791439 - 791283
Alignment:
Q  162 ttgataacgatctttttacaacaagcttatagctttatttc--agcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagctttt 259  Q
    ||||||||||| |||||||||| | ||||||||||  |||   |||||||||  ||||||  | |||||||| ||||| |||||||| |||||||||| |    
T  791439 ttgataacgat-tttttacaacgaacttatagcttattttatgagcttataagctatttttcagatgctattacaagtagcgtttgaacttatagcttat 791341  T
Q  260 aacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
    | ||||||||  ||| |  ||||| || ||||| |||||||||||||| |||| ||||    
T  791340 agcttatcatgttttattccatttataaccttaccactttaactaaaacccatgttta 791283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 314
Target Start/End: Original strand, 1342836 - 1342978
Alignment:
Q  174 tttttacaacaagcttatagctttatttcag---cttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaacttatcatc 270  Q
    |||||||||| |||||||||||| |||||||   |||||||  ||||||  | | |||| ||||||| ||||||||||||||||||| || ||||||||     
T  1342836 tttttacaacgagcttatagctt-atttcagaagcttataagctatttttcagaagctacttcaagtagcgtttgagcttatagcttatagcttatcatg 1342934  T
Q  271 ctttgtctcatttttacccttatcactttaactaaaatccattt 314  Q
     ||| |  |||||||| ||||||   |||| |||||| ||||||    
T  1342935 ttttcttccatttttatccttattgatttatctaaaacccattt 1342978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 269
Target Start/End: Original strand, 40893428 - 40893529
Alignment:
Q  170 gatctttttacaacaagcttatagctttatttca---gcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaacttat 266  Q
    ||||| ||||| || |||||||||||| ||||||   ||||||||  |||||| || |  ||||||||||| ||||||||||||||||||| || |||||    
T  40893428 gatctctttaccacgagcttatagctt-atttcacaagcttataagctattttttagaacctatttcaagtagcgtttgagcttatagcttatagcttat 40893526  T
Q  267 cat 269  Q
    |||    
T  40893527 cat 40893529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 19757611 - 19757517
Alignment:
Q  174 tttttacaacaagcttatagctttatttc--agcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaacttat 266  Q
    |||||||||| |||||||||||| |||    |||||||||  ||||||  ||| |||| ||||||| ||||||||||||||||||| || |||||    
T  19757611 tttttacaacgagcttatagcttaattcaggagcttataagctatttttcaaaagctacttcaagtagcgtttgagcttatagcttatagcttat 19757517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 21254738 - 21254700
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaactt 264  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  21254738 gctatttcaagtagcgtttgagcttatagcttataactt 21254700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 314
Target Start/End: Complemental strand, 46879619 - 46879477
Alignment:
Q  174 tttttacaacaagcttatagctttatttcag---cttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaacttatcatc 270  Q
    |||||||||| |||||||||||| |||||||   |||||||  ||||||  | | |||| ||||||| ||||||||||||||||||| || ||| | |      
T  46879619 tttttacaacgagcttatagctt-atttcaggagcttataagctatttttcagaagctacttcaagtagcgtttgagcttatagcttatagcttcttact 46879521  T
Q  271 ctttgtctcatttttacccttatcactttaactaaaatccattt 314  Q
     ||  | ||| |||||||||||| | |||| |||||||||||||    
T  46879520 tttaatttcaattttacccttattaatttatctaaaatccattt 46879477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 36612206 - 36612109
Alignment:
Q  174 tttttacaacaagcttatagctttatttcagc---ttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaacttatcat 269  Q
    |||||||||| ||||| |||||| |||||||    ||||||  |||||| || | |||| ||||||| ||||||||||||||||||| || ||||||||    
T  36612206 tttttacaacgagcttttagctt-atttcaggagtttataagctattttttagaagctacttcaagtagcgtttgagcttatagcttatagcttatcat 36612109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 1174897 - 1174979
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| ||||| ||||||||||||||||||| || ||| ||||  |||||||||||||||||||||||| |||||| |||||    
T  1174897 gctattccaagtagcgtttgagcttatagcttatagcttctcattttttgtctcatttttacccttatcaatttaacaaaaat 1174979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 3670391 - 3670473
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| ||||| ||||||||||||||||||| || ||| ||||  |||||||||||||||||||||||| |||||| |||||    
T  3670391 gctattccaagtagcgtttgagcttatagcttatagcttctcattttttgtctcatttttacccttatcaatttaacaaaaat 3670473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 35236691 - 35236609
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| ||||| ||||||||||||||||||| |||||| ||||  |||||||||||||||||||||||| | |||| |||||    
T  35236691 gctattccaagtagcgtttgagcttatagcttataacttctcattttttgtctcatttttacccttatcaatataacaaaaat 35236609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 308
Target Start/End: Complemental strand, 11663938 - 11663833
Alignment:
Q  203 agcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaac 302  Q
    ||||||||| |||||||  | | ||||||  |||| ||||||||||||||||||| ||| || ||||  |||||||||||||||||||||||| ||||||    
T  11663938 agcttataagttatttttcagaagctattctaagtagcgtttgagcttatagcttataaattctcattttttgtctcatttttacccttatcaatttaac 11663839  T
Q  303 taaaat 308  Q
     |||||    
T  11663838 aaaaat 11663833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 30774216 - 30774133
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatccttt-gtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| ||||| |||||||||||||||||||||| ||| ||||  ||| ||||||||||||||||||||| |||||| |||||    
T  30774216 gctattccaagtagcgtttgagcttatagcttttagcttctcatttttttgtctcatttttacccttatcaatttaacaaaaat 30774133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 10697382 - 10697464
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| ||||| | ||||||||||||||||| || ||| ||||  |||||||||||||||||||||||| |||||| |||||    
T  10697382 gctattccaagtagtgtttgagcttatagcttatagcttctcattttttgtctcatttttacccttatcaatttaacaaaaat 10697464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 314
Target Start/End: Original strand, 16474884 - 16474972
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattt 314  Q
    |||||| ||||| ||||||||||||||||||| || ||||||||| ||| |  ||||| ||||||||| | |||| |||||| ||||||    
T  16474884 gctattccaagtagcgtttgagcttatagcttatagcttatcatcttttcttccatttatacccttattattttatctaaaaaccattt 16474972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 11780197 - 11780235
Alignment:
Q  272 tttgtctcatttttacccttatcactttaactaaaatcc 310  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  11780197 tttgtctcatttttacccttattactttaactaaaatcc 11780235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 27005901 - 27005847
Alignment:
Q  203 agcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagctt 257  Q
    |||||||||||||||||  ||| ||||||||||||  ||||||||||||||||||    
T  27005901 agcttataacttattttccaaacgctatttcaagtaacgtttgagcttatagctt 27005847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 4657624 - 4657582
Alignment:
Q  227 ctatttcaagtggcgtttgagcttatagcttttaacttatcat 269  Q
    ||||||||||| | ||||||||||||||||| |||||||||||    
T  4657624 ctatttcaagtagagtttgagcttatagcttataacttatcat 4657582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 257
Target Start/End: Complemental strand, 11100842 - 11100755
Alignment:
Q  172 tctttttacaacaagcttatagctttatttca---gcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagctt 257  Q
    |||||||||||| |||||||||||| ||||||   ||||||||  ||||||  | | |||||| ||||| |||||||||||||||||||    
T  11100842 tctttttacaacgagcttatagctt-atttcacgagcttataagctatttttcagacgctattccaagtagcgtttgagcttatagctt 11100755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 43402534 - 43402588
Alignment:
Q  203 agcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagctt 257  Q
    |||||||||  ||||||  ||| |||||||||||| |||||||||||||||||||    
T  43402534 agcttataagctatttttcaaaagctatttcaagtagcgtttgagcttatagctt 43402588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 13936251 - 13936336
Alignment:
Q  174 tttttacaacaagcttatagctttatttca---gcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagctt 257  Q
    |||||||||| |||||||||||| ||||||   ||||||||  ||||||  | | |||||||||||| || ||||||||||||||||    
T  13936251 tttttacaacgagcttatagctt-atttcatgagcttataagctatttttcagacgctatttcaagtagcatttgagcttatagctt 13936336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 38880812 - 38880730
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| ||||| ||||||||||||||||||| || ||| ||||  |||||||||||||||||||||||| |||||| |||||    
T  38880812 gctattccaagtagcgtttgagcttatagcttatagcttctcattttttgtctcatttttacccttatcaatttaacaaaaat 38880730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 226 - 307
Target Start/End: Complemental strand, 23357014 - 23356933
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaa 307  Q
    |||||||||||| |||| ||||||||||||||||| ||| | ||| |||||  ||||||||||||||| | |||||||||||    
T  23357014 gctatttcaagtagcgtctgagcttatagcttttagctttttatcttttgttccatttttacccttattattttaactaaaa 23356933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 44275786 - 44275855
Alignment:
Q  239 gcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    ||||||||||||||||||| || ||| ||||  |||||||||||||||||||||||| |||||| |||||    
T  44275786 gcgtttgagcttatagcttatagcttctcattttttgtctcatttttacccttatcaatttaacaaaaat 44275855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 3337198 - 3337262
Alignment:
Q  253 agcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
    ||||| || ||||||||| ||| | ||||||| ||||||||||||||||||||||||||||||||    
T  3337198 agcttatagcttatcatcttttatttcattttcacccttatcactttaactaaaatccattttta 3337262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 314
Target Start/End: Original strand, 25071482 - 25071569
Alignment:
Q  227 ctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattt 314  Q
    ||||| ||||| ||||||||||||||||||| || ||||||||| ||| |  ||||| ||||||||| | |||| |||||| ||||||    
T  25071482 ctattccaagtagcgtttgagcttatagcttatagcttatcatcttttcttccatttatacccttattattttatctaaaaaccattt 25071569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 317
Target Start/End: Original strand, 38842946 - 38843037
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
    |||||||||||| |||||||| |||||||||| |||||| ||||  ||| || ||||||||||| ||| | ||||| |||||| ||| ||||    
T  38842946 gctatttcaagtagcgtttgaacttatagcttataacttctcatattttatcccatttttacccatattattttaattaaaattcatgttta 38843037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 307
Target Start/End: Original strand, 15250193 - 15250297
Alignment:
Q  203 agcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaac 302  Q
    ||||||||| |||||||  | | |||||| ||||| |||||||||||||||| || || ||| ||||  |||||  ||||| ||||||||||| |||||     
T  15250193 agcttataagttatttttcagacgctattccaagtagcgtttgagcttatagtttatagcttgtcatgttttgttccatttctacccttatcattttaat 15250292  T
Q  303 taaaa 307  Q
    |||||    
T  15250293 taaaa 15250297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 40869350 - 40869310
Alignment:
Q  272 tttgtctcatttttacccttatcactttaactaaaatccat 312  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  40869350 tttgtctcatttttacccttatcaatttaacaaaaatccat 40869310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 7823632 - 7823546
Alignment:
Q  173 ctttttacaacaagcttatagctttatttca---gcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagctt 257  Q
    ||||||||||| ||||| |||||| ||||||   ||||||||  |||||| || | |||| ||||||| |||||||||||||||||||    
T  7823632 ctttttacaacgagcttgtagctt-atttcacgagcttataagctattttttataagctacttcaagtagcgtttgagcttatagctt 7823546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 2757301 - 2757365
Alignment:
Q  244 tgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||||||| ||| |||||||||||  ||| | |||||||||||||||| | |||| |||||||    
T  2757301 tgagcttataacttataacttatcattttttctttcatttttacccttattattttatctaaaat 2757365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 4056014 - 4056082
Alignment:
Q  239 gcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaa 307  Q
    |||||||| |||||||||| || ||||||||  ||| | ||||||||||| |||||| ||||| |||||    
T  4056014 gcgtttgaacttatagcttatagcttatcatgttttatttcatttttacctttatcattttaattaaaa 4056082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 6760595 - 6760559
Alignment:
Q  272 tttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||||||||||||||||||||| |||||| |||||    
T  6760595 tttgtctcatttttacccttatcaatttaacaaaaat 6760559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 6807483 - 6807535
Alignment:
Q  205 cttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagctt 257  Q
    |||||| ||||||||  | | |||||||||||| |||||||||||||||||||    
T  6807483 cttatagcttatttttcagacgctatttcaagtagcgtttgagcttatagctt 6807535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 41796733 - 41796697
Alignment:
Q  272 tttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||||||||||||||||||||| |||||| |||||    
T  41796733 tttgtctcatttttacccttatcaatttaacaaaaat 41796697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 37560562 - 37560480
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| ||||| ||||||||||||||||||| || ||| || |  |||||||||||||||||||||||| |||||| |||||    
T  37560562 gctattccaagtagcgtttgagcttatagcttatagcttctctttttttgtctcatttttacccttatcaatttaacaaaaat 37560480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 317
Target Start/End: Complemental strand, 43849294 - 43849149
Alignment:
Q  174 tttttacaacaagcttatagctttatttc--agcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaacttatcatcc 271  Q
    |||||||||| ||||||||||||  |||   |||||||||  ||||||  | |||||||| ||||| ||||||||||||||||||| || ||||||||      
T  43849294 tttttacaacgagcttatagcttattttatgagcttataagctatttttcagatgctattacaagtagcgtttgagcttatagcttatagcttatcatgt 43849195  T
Q  272 tttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
    ||| |  ||||| |||||||| ||||||||| |||| |||| ||||    
T  43849194 tttattccatttatacccttaccactttaaccaaaacccatgttta 43849149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 2642451 - 2642370
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| ||||| ||||||||||||||||||| || ||| ||||  |||||||||||||||||| ||||| |||||| |||||    
T  2642451 gctattccaagtagcgtttgagcttatagcttatagcttctcattttttgtctcatttttaccc-tatcaatttaacaaaaat 2642370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 317
Target Start/End: Complemental strand, 8436622 - 8436466
Alignment:
Q  162 ttgataacgatctttttacaacaagcttatagctttatttc--agcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagctttt 259  Q
    ||||||||||| |||||||||| | ||||||||||  |||   ||||||||| |||||||  | |||||||| ||| |  ||||||| |||||||||| |    
T  8436622 ttgataacgat-tttttacaacgaacttatagcttattttatgagcttataagttatttttcagatgctattacaaatatcgtttgaacttatagcttat 8436524  T
Q  260 aacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
    | ||||||||  ||| |  ||||| |||||||| |||||||||||||| |||| ||||    
T  8436523 agcttatcatgttttattccatttatacccttaccactttaactaaaacccatgttta 8436466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 270
Target Start/End: Complemental strand, 9370393 - 9370305
Alignment:
Q  185 agcttatagctttatttca---gcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaacttatcatc 270  Q
    |||||||| ||||||||||   ||||||||  ||||||  ||| | |||||||||| ||||||||||||||||||| ||||||||||||    
T  9370393 agcttataactttatttcacgagcttataagctatttttcaaaagttatttcaagtagcgtttgagcttatagcttataacttatcatc 9370305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 317
Target Start/End: Complemental strand, 29189813 - 29189668
Alignment:
Q  174 tttttacaacaagcttatagctttatttca---gcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaacttatcatc 270  Q
    ||||||| || |||||||||||| ||||||   |||||||  |||||||  | | |||||| ||||| ||||||||||||| ||||| || ||| |||||    
T  29189813 tttttactacgagcttatagctt-atttcacgagcttatatgttatttttaagaagctattccaagtagcgtttgagcttacagcttatagcttctcatc 29189715  T
Q  271 ctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
     ||| |  ||||||||||||||| | |||| |||||||||| |||||    
T  29189714 ttttcttccatttttacccttattattttatctaaaatccaatttta 29189668  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 39677446 - 39677560
Alignment:
Q  203 agcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaac 302  Q
    |||||||||  ||||||  ||| |||||| ||||| | ||||||||||||||||| || ||||||||| ||| |  ||||| ||||||||| | |||| |    
T  39677446 agcttataagctatttttcaaaagctattccaagtagtgtttgagcttatagcttatagcttatcatcttttcttccatttatacccttattattttatc 39677545  T
Q  303 taaaatccattttta 317  Q
    ||||| ||| |||||    
T  39677546 taaaaaccaatttta 39677560  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 34395340 - 34395300
Alignment:
Q  272 tttgtctcatttttacccttatcactttaactaaaatccat 312  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  34395340 tttgtctcatttttacccttatcaatttaacaaaaatccat 34395300  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 40045470 - 40045544
Alignment:
Q  185 agcttatagctttatttc-agcttataa-cttattttgtaaatgctatttcaagtggcgtttgagcttatagctt 257  Q
    ||||||||||||| || | ||||||||| ||||||||  | | |||||||||||| |||||||||||||||||||    
T  40045470 agcttatagcttttttactagcttataagcttatttttcagacgctatttcaagtagcgtttgagcttatagctt 40045544  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 9211138 - 9211174
Alignment:
Q  272 tttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||||||||||||||||||||| |||||| |||||    
T  9211138 tttgtctcatttttacccttatcaatttaacaaaaat 9211174  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 7317644 - 7317562
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaat 308  Q
    |||||| ||| | ||||||||||||||||||| || ||| ||||  |||||||||||||||||||||||| |||||| |||||    
T  7317644 gctattccaaatagcgtttgagcttatagcttatagcttctcattttttgtctcatttttacccttatcaatttaacaaaaat 7317562  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 11443060 - 11443149
Alignment:
Q  227 ctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattttt 316  Q
    ||||||||||| ||||||||||||||| |||||||||||||||| ||| |  ||||| || |||||| | |||| |||||||||| ||||    
T  11443060 ctatttcaagtagcgtttgagcttatatcttttaacttatcatcttttcttccatttatatccttattattttatctaaaatccaatttt 11443149  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 317
Target Start/End: Complemental strand, 12140912 - 12140821
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
    |||||||||||| |||||||| |||||||||| || ||||| ||| |||||  | ||||||||||||| | |||||||||||| ||| ||||    
T  12140912 gctatttcaagtagcgtttgaacttatagcttatagcttattatcttttgttccttttttacccttattattttaactaaaattcatattta 12140821  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 26561408 - 26561487
Alignment:
Q  173 ctttttacaacaagcttatagctttatttcag---cttataacttattttgtaaatgctatttcaagtggcgtttgagctt 250  Q
    ||||||||||| ||||||||| ||||||||||   |||||||||||||||  ||| |||||||||||| ||||||||||||    
T  26561408 ctttttacaacgagcttatag-tttatttcaggagcttataacttatttttcaaacgctatttcaagtagcgtttgagctt 26561487  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 307
Target Start/End: Original strand, 21894365 - 21894446
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaa 307  Q
    |||||| ||||| ||||||||||||||||||| || ||||||||| ||| |  ||||||||| ||||||| ||||| |||||    
T  21894365 gctattccaagtagcgtttgagcttatagcttatagcttatcatcttttcttccatttttacgcttatcattttaattaaaa 21894446  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 257
Target Start/End: Complemental strand, 5893990 - 5893896
Alignment:
Q  165 ataacgatctttttacaacaagcttatagctttatttc--agcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagctt 257  Q
    |||||| |||||| || |||||||| ||||||  |||   |||||||||||||||||  | | |||||||||||| |||||||||||||||||||    
T  5893990 ataacggtcttttcaccacaagcttttagcttattttactagcttataacttattttccagacgctatttcaagtagcgtttgagcttatagctt 5893896  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 27720666 - 27720596
Alignment:
Q  241 gtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccat 312  Q
    ||||||||||||||||| || ||| ||||  |||||||||||||||||||||||| |||| | |||||||||    
T  27720666 gtttgagcttatagcttatagcttctcatt-tttgtctcatttttacccttatcaatttatcaaaaatccat 27720596  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 307
Target Start/End: Original strand, 20563507 - 20563588
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaa 307  Q
    |||||||||||| || | |||||||||||||||||  || | ||| |||||  ||||||||||||||| | |||||||||||    
T  20563507 gctatttcaagtagcatctgagcttatagcttttagttttttatcttttgttccatttttacccttattattttaactaaaa 20563588  T

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Target: scaffold1632 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold1632
Description:

Target: scaffold1632; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 70 - 1
Alignment:
Q  226 gctatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatca 295  Q
    |||||| ||||| ||||||||||||||||||| || ||| ||||  ||||||||||||||||||||||||    
T  70 gctattccaagtagcgtttgagcttatagcttatagcttctcattttttgtctcatttttacccttatca 1  T

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Target: scaffold1360 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 317
Target Start/End: Complemental strand, 1276 - 1187
Alignment:
Q  228 tatttcaagtggcgtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccattttta 317  Q
    |||||||||| || |||||||||||||||| || ||||||||  ||| | |||||||||||||||| | |||| |||||||||| |||||    
T  1276 tatttcaagtagcatttgagcttatagcttatagcttatcatattttctttcatttttacccttattattttatctaaaatccaatttta 1187  T

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Target: scaffold0349 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 10085 - 10015
Alignment:
Q  241 gtttgagcttatagcttttaacttatcatcctttgtctcatttttacccttatcactttaactaaaatccat 312  Q
    ||||||||||||||||| || ||| ||||  |||||||||||||||||||||||| |||| | |||||||||    
T  10085 gtttgagcttatagcttatagcttctcatt-tttgtctcatttttacccttatcaatttatcaaaaatccat 10015  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 270
Target Start/End: Complemental strand, 119326 - 119228
Alignment:
Q  174 tttttacaacaagcttatagctttatttca---gcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaacttatcatc 270  Q
    |||||||||| |||||||||||| ||||||   ||||||||  ||||||  | || ||||| ||||| | ||||||||||||||||| ||||||||||||    
T  119326 tttttacaacgagcttatagctt-atttcacgagcttataagctatttttcagatcctattccaagtagagtttgagcttatagcttataacttatcatc 119228  T

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Target: scaffold0418 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 4644 - 4684
Alignment:
Q  272 tttgtctcatttttacccttatcactttaactaaaatccat 312  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  4644 tttgtctcatttttacccttatcaatttaacaaaaatccat 4684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 269
Target Start/End: Complemental strand, 72856 - 72755
Alignment:
Q  170 gatctttttacaacaagcttatagctttatttca---gcttataacttattttgtaaatgctatttcaagtggcgtttgagcttatagcttttaacttat 266  Q
    ||||| ||||| || |||||||||||| ||||||   ||||||||  |||||| || |  ||||||||||| ||||||||||||||||||| || |||||    
T  72856 gatctctttaccacgagcttatagctt-atttcacaagcttataagctattttttagaacctatttcaagtagcgtttgagcttatagcttatagcttat 72758  T
Q  267 cat 269  Q
    |||    
T  72757 cat 72755  T

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