View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15116_low_14 (Length: 287)
Name: NF15116_low_14
Description: NF15116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15116_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 6347940 - 6348129
Alignment:
| Q |
11 |
ttattctcttacattttctttaaatatttcaattgtctacgtgttagtgtcaatatcatatatgttgtctatgtatgcgtcaatgctacatactattcaa |
110 |
Q |
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| T |
6347940 |
ttattcgcatacattttcttgaaatatttccaatgtctacgtatcggtgtcaatatcatatatgttgtctatgtatgcgtcaatgctacataccattcaa |
6348039 |
T |
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| Q |
111 |
tctaaagatagacacttcatatcaatgggtctgatgtttgatatacgacgacaccaacacatatgattatattttcttaaaatattatca |
200 |
Q |
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| T |
6348040 |
tttaaagattgacacttcatattaatgggtctgatgtctgacatgcgacaacaccgacacatatgattacattttcttaaaatattatca |
6348129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 6325729 - 6325910
Alignment:
| Q |
18 |
cttacattttctttaaatatttcaattgtctacgtgttagtgtcaatatcatatatgttgtctatgtatgcgtcaatgctacatactattcaatctaaag |
117 |
Q |
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| T |
6325729 |
cttatattttcttgaaatatttctaatgtctacgtgtcagtgtcaatatcatatatgttgtctatgtatgtatcaatgctacataccattcaatctaaag |
6325828 |
T |
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| Q |
118 |
atagacacttcatatcaatgggtctgatgtttgatatacgacgacaccaacacatatgattatattttcttaaaatattatcagtgt |
204 |
Q |
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| T |
6325829 |
attgacacttcatattaatg-----gatgtccggcatgcgacgacaccaacacatatgattacattttcttaaaatattatcagtgt |
6325910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 6332685 - 6332866
Alignment:
| Q |
18 |
cttacattttctttaaatatttcaattgtctacgtgttagtgtcaatatcatatatgttgtctatgtatgcgtcaatgctacatactattcaatctaaag |
117 |
Q |
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| T |
6332685 |
cttatattttcttgaaatatttctaatgtctacgtgtcagtgtcaatatcatatatgttgtctatgtatgtatcaatgctacataccattcaatctaaag |
6332784 |
T |
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| Q |
118 |
atagacacttcatatcaatgggtctgatgtttgatatacgacgacaccaacacatatgattatattttcttaaaatattatcagtgt |
204 |
Q |
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| T |
6332785 |
attgacacttcatattaatg-----gatgtccggcatgcgacgacaccaacacatatgattacattttcttaaaatattatcagtgt |
6332866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 6348153 - 6348201
Alignment:
| Q |
167 |
acacatatgattatattttcttaaaatattatcagtgtaaatgttattt |
215 |
Q |
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| T |
6348153 |
acacatatgattacattttcttaaaatattatcagtgtaaatattattt |
6348201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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