View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15116_low_15 (Length: 281)
Name: NF15116_low_15
Description: NF15116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15116_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 42938960 - 42939217
Alignment:
| Q |
19 |
acataatttgatgcatcttataaaaatcaattcttgactcacttagatatagataatcccatcaatttact---------cttacttttgcaatcatact |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42938960 |
acataatttgatgcatcttataaaaatcaattcttgactcacttagctata----atcccatcaatttaccatgtttctgcttacttttgcaatcatact |
42939055 |
T |
|
| Q |
110 |
ttctctctcaaggtctggccaccctttcttcttctattatctttgatgttgattcaaaaacattttgactactttattactatatattgccagtttgcca |
209 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42939056 |
ttctctctcaaggcctggccaccctttcatcttctattatctttgatgttgattcaaaaacattttgactactttattactatatattgccagtttgcca |
42939155 |
T |
|
| Q |
210 |
ccaatgttaaattcatttgctaaaaaatttgtctcactcttcaaactctcttctgtatgtat |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42939156 |
ccaatgttaaattcatttgctaaaaaatttgtctcactcttcaaactctcttctgtatgtat |
42939217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 9330798 - 9330864
Alignment:
| Q |
204 |
ttgccaccaatgttaaattcatttgctaaaaaatttgtctcactcttcaaactctcttctgtatgtat |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| |
|
|
| T |
9330798 |
ttgccaccaatgttaaattcatttgctaaaaaaattgtctcactcctcaaactctctt-tgtatgtat |
9330864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 9350447 - 9350513
Alignment:
| Q |
204 |
ttgccaccaatgttaaattcatttgctaaaaaatttgtctcactcttcaaactctcttctgtatgtat |
271 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||| | |||||||||| ||||||||||| |
|
|
| T |
9350447 |
ttgccaccaatgttaaatttatttgctaaataatttgtctcacacctcaaactctc-tctgtatgtat |
9350513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 9330749 - 9330796
Alignment:
| Q |
139 |
tcttctattatctttgatgttgattcaaaaacattttgactactttat |
186 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| ||||||||| |
|
|
| T |
9330749 |
tcttctattatctttgatgttgatccaaaaatcttttggctactttat |
9330796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 27464135 - 27464182
Alignment:
| Q |
22 |
taatttgatgcatcttataaaaatcaattcttgactcacttagatata |
69 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| |||||||||||||| |
|
|
| T |
27464135 |
taatttgatgcatcttatagaaattcattcttggctcacttagatata |
27464182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University