View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15116_low_2 (Length: 712)

Name: NF15116_low_2
Description: NF15116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15116_low_2
NF15116_low_2
[»] chr5 (9 HSPs)
chr5 (18-699)||(7154863-7155555)
chr5 (261-442)||(4261300-4261476)
chr5 (258-415)||(8787568-8787723)
chr5 (320-442)||(35106568-35106689)
chr5 (305-389)||(11695092-11695176)
chr5 (319-377)||(11067242-11067300)
chr5 (319-371)||(38460579-38460631)
chr5 (330-372)||(7941523-7941565)
chr5 (335-377)||(17150609-17150651)
[»] chr7 (8 HSPs)
chr7 (257-442)||(45669877-45670060)
chr7 (266-440)||(28574442-28574615)
chr7 (262-415)||(39023488-39023635)
chr7 (313-413)||(46574895-46574995)
chr7 (295-407)||(23709353-23709465)
chr7 (329-373)||(34875411-34875455)
chr7 (320-386)||(5964867-5964933)
chr7 (333-385)||(8290659-8290711)
[»] chr2 (9 HSPs)
chr2 (340-440)||(3272453-3272553)
chr2 (328-377)||(36198818-36198867)
chr2 (341-385)||(3272534-3272578)
chr2 (333-376)||(33041448-33041491)
chr2 (315-373)||(19076820-19076877)
chr2 (335-376)||(5536318-5536359)
chr2 (328-373)||(6456988-6457033)
chr2 (333-385)||(21871085-21871137)
chr2 (328-373)||(41828400-41828445)
[»] chr1 (10 HSPs)
chr1 (282-445)||(19152513-19152669)
chr1 (257-443)||(29827654-29827840)
chr1 (322-415)||(31017150-31017242)
chr1 (257-426)||(25175320-25175484)
chr1 (320-415)||(37493197-37493292)
chr1 (319-445)||(43449520-43449645)
chr1 (366-441)||(15965201-15965275)
chr1 (331-394)||(48273530-48273593)
chr1 (295-405)||(37213994-37214104)
chr1 (343-377)||(19411235-19411269)
[»] chr4 (3 HSPs)
chr4 (319-442)||(42507246-42507370)
chr4 (319-442)||(43793155-43793278)
chr4 (321-417)||(39904855-39904950)
[»] chr8 (9 HSPs)
chr8 (280-439)||(8164444-8164603)
chr8 (320-443)||(16611094-16611217)
chr8 (568-625)||(12751056-12751113)
chr8 (335-376)||(13520482-13520523)
chr8 (335-376)||(13610017-13610058)
chr8 (329-388)||(465027-465086)
chr8 (342-384)||(34198227-34198269)
chr8 (335-377)||(43468185-43468227)
chr8 (340-377)||(42987826-42987863)
[»] chr6 (5 HSPs)
chr6 (342-390)||(12748395-12748443)
chr6 (359-416)||(17706677-17706734)
chr6 (301-366)||(17706761-17706825)
chr6 (335-378)||(13164641-13164684)
chr6 (293-367)||(5267220-5267289)
[»] chr3 (8 HSPs)
chr3 (319-439)||(51726124-51726243)
chr3 (327-370)||(11086260-11086303)
chr3 (318-377)||(24635538-24635596)
chr3 (329-371)||(37361435-37361477)
chr3 (330-375)||(13877457-13877502)
chr3 (328-377)||(20088073-20088122)
chr3 (333-385)||(44582541-44582593)
chr3 (319-372)||(52431341-52431394)


Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 18 - 699
Target Start/End: Original strand, 7154863 - 7155555
Alignment:
Q  18 aactttaactttgttattca-tttcattctcatttttctttttgaagaagtagttcattatcattctattgactagaaatgagttttcaattgcagattg 116  Q
    |||||||||||||||||| | ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7154863 aactttaactttgttatttagtttcattatcattcttctttttgaagaagtagttcattatcattctattgactagaaatgagttttcaattgcagattg 7154962  T
Q  117 catcacatgatacagtcgcaatattgcggtgcaacaacat-----tgtaaatatatcaacccacaattgcattgtttgtaaatcacatgaaaatatgaat 211  Q
    ||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7154963 catcacatgatacagtcgcaatattgcggtgcaacaacatgcatctgcaaatatatcaacccacaattgcattgtttgtaaatcacatgaaaatatgaat 7155062  T
Q  212 cgcaaggctgcaacattgtgatcgtaacaatcgcatccagaccacgagatacacttgcttggtcgcaagcataaaaatgagtcatttaaacacacacaca 311  Q
     |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||    
T  7155063 tgcaaggctgcaacattgtgatcgtaacaatcgcatctagaccacgagatacacttgcttggtcacaagcataaaaacgagtcatttagacacacacaca 7155162  T
Q  312 taatgagaaaaagtatgaaagagaaaagaattaaataatatatatttttgaaataattaaatgatagatattttaatgagtgtatgtctaaatgattttg 411  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7155163 taatgataaaaagtatgaaagagaaaagaattaaataatatatatttttgaaataattaaatgatagatattttaatgagtgtatatctaaatgattttg 7155262  T
Q  412 atttagttttgtgtctatttaagtatttctcctagaccgcatacagttgaatcaggccacaacaaatcatatagtactcaaacatannnnnnnnnagggt 511  Q
    ||||||| |||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||| |||||         |||||    
T  7155263 atttagtattgtgtctatataagtatttctcctggaccacatacagttgaatcaggccacaacaaatcatatagtgctcacacatattcttttttagggt 7155362  T
Q  512 tgctcacacaaattattttctatattcttctttctttatatcaaatataaca-------aaaaagtttgatatatatatcaatgattaattacacacaaa 604  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||       | | |  |  ||||||||||||||||||||||  ||| |||    
T  7155363 tgctcacacaaattattttatatattcttctttctttatatcaaatataacatatatatatatatatatatatatatatcaatgattaatt--acataaa 7155460  T
Q  605 taaaaagcaaacagacaacaaattgcgccgttaaacttttttggtttaatcgtggatttagaaagtaatttgaatgagtatgagatttgttaatg 699  Q
    |||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7155461 taaaaagcaaacagacaacaaattgcaccgctatacttttttggtttaatcgtggatttagaaagtaatttgaatgagtatgagatttgttaatg 7155555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 261 - 442
Target Start/End: Complemental strand, 4261476 - 4261300
Alignment:
Q  261 tacacttgcttggtcgcaagcataaaaa-tgagtcatttaaacacacacacataatgagaaaaagtatgaaagagaaaagaattaaataatatatatttt 359  Q
    ||||||| |||| || |||||||||||| ||||||||||| |||||||    |||| | ||||||||||||||||||||  |||||||||||||||||||    
T  4261476 tacacttacttgatcacaagcataaaaaatgagtcatttagacacaca----taataaaaaaaagtatgaaagagaaaa--attaaataatatatatttt 4261383  T
Q  360 tgaaataattaaatgatagatattttaatgagtgtatgtctaaatgattttgatttagttttgtgtctatttaagtatttctc 442  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| || ||||| |||| ||||||||||||    
T  4261382 tgaaataattaaataatagatattttaattagtgtgtgtctaaatgattttgatttggtgttgtggctatataagtatttctc 4261300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 258 - 415
Target Start/End: Original strand, 8787568 - 8787723
Alignment:
Q  258 agatacacttgcttggtcgcaagcataaaaatgagtcatttaaacacacacacataatgagaaaaagtatgaaagagaaaagaattaaataatatatatt 357  Q
    ||||||| ||| ||||||  ||| ||||| || ||||| ||| ||||| | ||||||  |||||||||||||||||||||||| | ||||||||||| ||    
T  8787568 agatacatttgtttggtcagaagtataaatataagtcacttagacacatatacataaa-agaaaaagtatgaaagagaaaagattgaaataatatatctt 8787666  T
Q  358 tttgaaataattaaatgatagatattttaatgagtgtatgtctaaatgattttgattt 415  Q
    ||| |||||| |||||||||||||| ||||||||| | ||| ||||||||||||||||    
T  8787667 tttaaaataa-taaatgatagatatattaatgagtatgtgtttaaatgattttgattt 8787723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 320 - 442
Target Start/End: Complemental strand, 35106689 - 35106568
Alignment:
Q  320 aaaagtatgaaagagaaaagaattaaataatatatatttttgaaataattaaatgatagatattttaatgagtgtatgtctaaatgattttgatttagtt 419  Q
    |||||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |  |||||| | |||||||| ||     
T  35106689 aaaagtatgaaagagaagtaaattaaataatatatctttttgaaataattaaatgatagatatttgaatgagtgtgtccctaaat-aatttgatttggtg 35106591  T
Q  420 ttgtgtctatttaagtatttctc 442  Q
    ||||||| ||  |||||||||||    
T  35106590 ttgtgtccatacaagtatttctc 35106568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 305 - 389
Target Start/End: Original strand, 11695092 - 11695176
Alignment:
Q  305 acacacataatgagaaaaagtatgaaagagaaaagaattaaataatatatatttttgaaataattaaatgatagatattttaatg 389  Q
    |||||| |||| ||||||| ||||||||| |||||||||||||||||||||||||  || |||||||||||| ||||||||||||    
T  11695092 acacacgtaattagaaaaaatatgaaagataaaagaattaaataatatatattttaaaattaattaaatgatcgatattttaatg 11695176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 319 - 377
Target Start/End: Complemental strand, 11067300 - 11067242
Alignment:
Q  319 aaaaagtatgaaagagaaaagaattaaataatatatatttttgaaataattaaatgata 377  Q
    ||||||||  ||||| ||||||||||||||||  |||||||| ||||||||||||||||    
T  11067300 aaaaagtacaaaagaaaaaagaattaaataatgaatatttttaaaataattaaatgata 11067242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 38460579 - 38460631
Alignment:
Q  319 aaaaagtatgaaagagaaaagaattaaataatatatatttttgaaataattaa 371  Q
    |||| ||| |||||||||||||||||||| |||| || |||||||||||||||    
T  38460579 aaaatgtacgaaagagaaaagaattaaatgatatgtacttttgaaataattaa 38460631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 330 - 372
Target Start/End: Complemental strand, 7941565 - 7941523
Alignment:
Q  330 aagagaaaagaattaaataatatatatttttgaaataattaaa 372  Q
    ||||||||||||||||||||| |||||||||  ||||||||||    
T  7941565 aagagaaaagaattaaataatgtatatttttagaataattaaa 7941523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 335 - 377
Target Start/End: Original strand, 17150609 - 17150651
Alignment:
Q  335 aaaagaattaaataatatatatttttgaaataattaaatgata 377  Q
    |||| |||||||||||| |||||||| ||||||||||||||||    
T  17150609 aaaataattaaataataaatatttttaaaataattaaatgata 17150651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 1e-55; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 257 - 442
Target Start/End: Complemental strand, 45670060 - 45669877
Alignment:
Q  257 gagatacacttgcttggtcgcaagcataaaaatgagtcatttaaacacacacacataatgagaaaaagtatgaaagagaaaagaattaaataatatatat 356  Q
    |||| |||||||||| ||| ||||||||||| ||| |||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||| | |    
T  45670060 gagaaacacttgcttagtcacaagcataaaagtgactcatttaaacacacaca--taatgagaaaaaatatgaaagagaaaagaattaaataatattttt 45669963  T
Q  357 ttttgaaataattaaatgatagatattttaatgagtgtatgtctaaatgattttgatttagttttgtgtctatttaagtatttctc 442  Q
    |||| ||||||||||||||||||||||||||||||||| || |||||| |||||||||| || |||| ||||| ||||||||||||    
T  45669962 tttttaaataattaaatgatagatattttaatgagtgtgtgcctaaataattttgatttggtgttgtctctatataagtatttctc 45669877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 266 - 440
Target Start/End: Original strand, 28574442 - 28574615
Alignment:
Q  266 ttgcttggtcgcaagcataaaaatgagtcatttaaacacacacacataatgagaaaaagtatgaaagagaaaagaattaaataatatatatttttgaaat 365  Q
    |||||||||  |||||||||| ||| ||||||||  | || ||||||||  |  |||||||||||||||||||||||| || ||||||| ||||||||||    
T  28574442 ttgcttggtgacaagcataaatatgtgtcatttaggcgcatacacataaaaaagaaaagtatgaaagagaaaagaatttaa-aatatatctttttgaaat 28574540  T
Q  366 aattaaatgatagatattttaatgagtgtatgtctaaatgattttgatttagttttgtgtctatttaagtatttc 440  Q
    || |||||||||||||||||||||||||| || ||||| ||||||||||| || ||||||| || ||||||||||    
T  28574541 aactaaatgatagatattttaatgagtgtgtgcctaaaagattttgatttggtgttgtgtccatataagtatttc 28574615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 262 - 415
Target Start/End: Complemental strand, 39023635 - 39023488
Alignment:
Q  262 acacttgcttggtcgcaagcataaaaatgagtcatttaaacacacacacataatgagaaaaagtatgaaagagaaaagaattaaataatatatatttttg 361  Q
    ||||||||||||||||||||||||| ||| | | |     | |||| ||||||  || ||||||||||||||||||||||||||| ||||||| ||||||    
T  39023635 acacttgcttggtcgcaagcataaatatgtggcgtg----cgcacatacataaaaaggaaaagtatgaaagagaaaagaattaaaaaatatatctttttg 39023540  T
Q  362 aaataattaaatgatagatattttaatgagtgtatgtctaaatgattttgattt 415  Q
    |||||||||||||||| |||||||||||||||||   |||| ||||||||||||    
T  39023539 aaataattaaatgataaatattttaatgagtgta--cctaagtgattttgattt 39023488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 46574995 - 46574895
Alignment:
Q  313 aatgagaaaaagtatgaaagagaaaagaattaaataatatat--atttttgaaataattaaatgatagatattttaatgagtgtatgtctaaatgatttt 410  Q
    ||||| ||||| ||||||||||||||  ||||||||||||||  |||||| || ||||||| |||||||||||||||||||||||| ||||||| |||||    
T  46574995 aatgaaaaaaaatatgaaagagaaaa--attaaataatatatttatttttaaagtaattaattgatagatattttaatgagtgtatatctaaataatttt 46574898  T
Q  411 gat 413  Q
    |||    
T  46574897 gat 46574895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 295 - 407
Target Start/End: Original strand, 23709353 - 23709465
Alignment:
Q  295 atttaaacacacacacataatgagaaaaagtat-gaaagagaaaagaattaaataatatatatttttgaaataattaaatgatagatattttaatgagtg 393  Q
    ||||||||||||| ||||||| | ||||| ||| || |||||||| ||||||||||||| | ||||| |||||||||||||| | |||||||  || |||    
T  23709353 atttaaacacacatacataatta-aaaaattatagagagagaaaataattaaataatatttcttttttaaataattaaatgaaatatatttttgtgtgtg 23709451  T
Q  394 tatgtctaaatgat 407  Q
      ||||||||||||    
T  23709452 agtgtctaaatgat 23709465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 34875411 - 34875455
Alignment:
Q  329 aaagagaaaagaattaaataatatatatttttgaaataattaaat 373  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||    
T  34875411 aaagagaaaataattaaataatatatattttttaaataattaaat 34875455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 320 - 386
Target Start/End: Complemental strand, 5964933 - 5964867
Alignment:
Q  320 aaaagtatgaaagagaaaagaattaaataatatatatttttgaaataattaaatgatagatatttta 386  Q
    |||||||||||||| ||| |||||| ||| |||||| |||||||||||| | |||||| ||||||||    
T  5964933 aaaagtatgaaagaaaaatgaattatatagtatataattttgaaataatgatatgatatatatttta 5964867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 333 - 385
Target Start/End: Original strand, 8290659 - 8290711
Alignment:
Q  333 agaaaagaattaaataatatatatttttgaaataattaaat-gatagatatttt 385  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||| |||||||    
T  8290659 agaaaagaattaaataatatata-ttttaaaataattaaatcgatatatatttt 8290711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 340 - 440
Target Start/End: Complemental strand, 3272553 - 3272453
Alignment:
Q  340 aattaaataatatatatttttgaaataattaaatgatagatattttaatgagtgtatgtctaaatgattttgatttagttttgtgtctatttaagtattt 439  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| || |||||||||| ||| |||||    
T  3272553 aattaaataatatatatttttgaaataattaaataatagatattttaatgagtatatgtctaaatgattttgatttggtgttgtgtctatataattattt 3272454  T
Q  440 c 440  Q
    |    
T  3272453 c 3272453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 36198867 - 36198818
Alignment:
Q  328 gaaagagaaaagaattaaataatatatatttttgaaataattaaatgata 377  Q
    |||| |||||||||||||||||||||||||||  ||||||||||||||||    
T  36198867 gaaaaagaaaagaattaaataatatatattttcaaaataattaaatgata 36198818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 341 - 385
Target Start/End: Complemental strand, 3272578 - 3272534
Alignment:
Q  341 attaaataatatatatttttgaaataattaaatgatagatatttt 385  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||    
T  3272578 attaaataatatatatttttgaaataattaaataatatatatttt 3272534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 333 - 376
Target Start/End: Original strand, 33041448 - 33041491
Alignment:
Q  333 agaaaagaattaaataatatatatttttgaaataattaaatgat 376  Q
    |||||||||||||||||| ||||||||| |||||||||||||||    
T  33041448 agaaaagaattaaataatgtatatttttcaaataattaaatgat 33041491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 19076877 - 19076820
Alignment:
Q  315 tgagaaaaagtatgaaagagaaaagaattaaataatatatatttttgaaataattaaat 373  Q
    |||||||| ||| ||||||||||| ||||||||||||| ||||||| ||||||| ||||    
T  19076877 tgagaaaaggta-gaaagagaaaataattaaataatatttattttttaaataatgaaat 19076820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 376
Target Start/End: Complemental strand, 5536359 - 5536318
Alignment:
Q  335 aaaagaattaaataatatatatttttgaaataattaaatgat 376  Q
    |||| ||||||||||||||||||||| |||||||||| ||||    
T  5536359 aaaataattaaataatatatatttttaaaataattaagtgat 5536318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 6456988 - 6457033
Alignment:
Q  328 gaaagagaaaagaattaaataatatatatttttgaaataattaaat 373  Q
    ||||||||||| ||||||||||||| ||||||| ||||||| ||||    
T  6456988 gaaagagaaaataattaaataatatttattttttaaataatgaaat 6457033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 333 - 385
Target Start/End: Original strand, 21871085 - 21871137
Alignment:
Q  333 agaaaagaattaaataatatatatttttgaaataattaaat-gatagatatttt 385  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||| |||||||    
T  21871085 agaaaagaattaaataatatata-ttttaaaataattaaatcgatatatatttt 21871137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 328 - 373
Target Start/End: Complemental strand, 41828445 - 41828400
Alignment:
Q  328 gaaagagaaaagaattaaataatatatatttttgaaataattaaat 373  Q
    ||||||||||| ||||||||||||||||||| | ||||| ||||||    
T  41828445 gaaagagaaaaaaattaaataatatatatttataaaatatttaaat 41828400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 282 - 445
Target Start/End: Original strand, 19152513 - 19152669
Alignment:
Q  282 ataaaaatgagtcatttaaacacacacacataatgagaaaaagtatgaaagagaaaagaattaaataatatatatttttgaaataattaaatgatagata 381  Q
    |||||||||||||||||||||||      ||||||| ||||| |||||||||||||||||||||||||  ||||||||| ||||||||||   |||||||    
T  19152513 ataaaaatgagtcatttaaacac------ataatgaaaaaaaatatgaaagagaaaagaattaaataacgtatatttttaaaataattaa---atagata 19152603  T
Q  382 ttttaatgagtgtatgtctaaatgattttgatttagttttgtgtc--tatttaagtatttctccta 445  Q
    ||||||||||||| || ||||||||||||||||| || ||| |||  ||| |||||||||||||||    
T  19152604 ttttaatgagtgtttgcctaaatgattttgatttggtattgcgtctatatataagtatttctccta 19152669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 257 - 443
Target Start/End: Complemental strand, 29827840 - 29827654
Alignment:
Q  257 gagatacacttgcttggtcgcaagcataaaaatgagtcatttaaacacacacacataatgaga-aaaagtatgaaagagaaaagaattaaataatatata 355  Q
    |||||||||||||||  || ||| |||||| || | ||||||| |||||| |||||||  ||| |||||||||||||||||| ||||| ||||||||||     
T  29827840 gagatacacttgcttaatcacaaccataaatataaatcatttagacacactcacataaa-agagaaaagtatgaaagagaaatgaattgaataatatatc 29827742  T
Q  356 tttttgaaataattaaatgatagatattttaatgagtgtatgtctaaatgattttgatttagttttgtgtctatttaagtatttctcc 443  Q
     ||||||||||||||||| |||||||||||||||| ||| || | |||| ||||| |||| || | ||||| || |||||||||||||    
T  29827741 cttttgaaataattaaattatagatattttaatgaatgtgtgccaaaataattttaatttggtgtcgtgtccatataagtatttctcc 29827654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 322 - 415
Target Start/End: Original strand, 31017150 - 31017242
Alignment:
Q  322 aagtatgaaagagaaaagaattaaataatatatatttttgaaataattaaatgatagatattttaatgagtgtatgtctaaatgattttgattt 415  Q
    ||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |  |||||| ||||||||||    
T  31017150 aagtatgaaagtgaaaagaattaaataatatatattttt-aattaattaaatgatagatattttaatgagtgtgtacctaaataattttgattt 31017242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 257 - 426
Target Start/End: Complemental strand, 25175484 - 25175320
Alignment:
Q  257 gagatacacttgcttggtcgcaagcataaaaatgagtcatttaaacacacacacataatgagaaaaagtatgaaagagaaaagaattaaataatatatat 356  Q
    |||| ||||||| |||||| |||||||||| || ||||||||| || |||| ||||||   ||||  ||||||||||||||||| ||||   |||| | |    
T  25175484 gagacacacttgattggtcacaagcataaatataagtcatttagactcacatacataaaaggaaa--gtatgaaagagaaaagacttaa--tatat-ttt 25175390  T
Q  357 ttttgaaataattaaatgatagatattttaatgagtgtatgtctaaatgattttgatttagttttgtgtc 426  Q
    |||||||||||||||||||||||||||||||||||  | || ||||||||||||||||| || |||||||    
T  25175389 ttttgaaataattaaatgatagatattttaatgaggatgtgcctaaatgattttgatttggtgttgtgtc 25175320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 320 - 415
Target Start/End: Complemental strand, 37493292 - 37493197
Alignment:
Q  320 aaaagtatgaaagagaaaagaattaaataatatatatttttgaaataattaaatgatagatattttaatgagtgtatgtctaaatgattttgattt 415  Q
    ||||||||| |||||||| |||| ||||||||||| |||||||||| |||||||||||||| ||||||||| ||| || ||||||||| |||||||    
T  37493292 aaaagtatggaagagaaaggaatgaaataatatatctttttgaaattattaaatgatagatgttttaatgaatgtgtgcctaaatgatattgattt 37493197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 319 - 445
Target Start/End: Original strand, 43449520 - 43449645
Alignment:
Q  319 aaaaagtatgaaagagaaaagaattaaataatatatatttttgaaataattaaatgatagatattttaatgagtgtatgtctaaatgattttgatttagt 418  Q
    |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||  |||||| |||||||| || |||||| | ||  |||| |     
T  43449520 aaaaagtatgaaagagaaaataattaaataatatgtatttttaaaataattaaatgatatgtatttt-atgagtgtgtgcctaaataacttcaatttggg 43449618  T
Q  419 tttgtgtctatttaagtatttctccta 445  Q
    |||||| ||||  ||| ||||||||||    
T  43449619 tttgtgactatacaagaatttctccta 43449645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 366 - 441
Target Start/End: Complemental strand, 15965275 - 15965201
Alignment:
Q  366 aattaaatgatagatattttaatgagtgtatgtctaaatgattttgatttagttttgtgtctatttaagtatttct 441  Q
    |||||||||||| |||||||||||| ||| ||||||||||| |||||||| || |||||||||| ||| |||||||    
T  15965275 aattaaatgataaatattttaatgaatgtgtgtctaaatga-tttgatttggtgttgtgtctatataaatatttct 15965201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 331 - 394
Target Start/End: Complemental strand, 48273593 - 48273530
Alignment:
Q  331 agagaaaagaattaaataatatatatttttgaaataattaaatgatagatattttaatgagtgt 394  Q
    |||||||||||||||||||||| |||||||||||||| ||||| |||  |||||| ||| ||||    
T  48273593 agagaaaagaattaaataatatgtatttttgaaataactaaataatatgtattttgatgtgtgt 48273530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 405
Target Start/End: Original strand, 37213994 - 37214104
Alignment:
Q  295 atttaaacacacacacataat-gagaaaaagtatgaaagagaaaagaattaaataatatatatttttgaaataattaaatgatagatattttaatgagtg 393  Q
    ||||| ||||||| ||||||| ||||||| ||| ||||||||||| ||||||||||| | || |||| ||||||| |||| | | ||||||| ||| |||    
T  37213994 atttagacacacatacataattgagaaaaggta-gaaagagaaaataattaaataatgtttaatttttaaataatgaaataaaatatatttttatgtgtg 37214092  T
Q  394 tatgtctaaatg 405  Q
    |  |||||||||    
T  37214093 tgcgtctaaatg 37214104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 19411269 - 19411235
Alignment:
Q  343 taaataatatatatttttgaaataattaaatgata 377  Q
    ||||||||||||||||||||||||||| |||||||    
T  19411269 taaataatatatatttttgaaataatttaatgata 19411235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 6e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 319 - 442
Target Start/End: Original strand, 42507246 - 42507370
Alignment:
Q  319 aaaaagtatgaaagagaaaagaattaaataata-tatatttttgaaataattaaatgatagatattttaatgagtgtatgtctaaatgattttgatttag 417  Q
    ||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |||||||||||||  || ||||||||||||| |    
T  42507246 aaaaagtatgaaaaagaaaagaattaaataataatatctttttgaaataattaaataatagatattataatgagtgtatgattatatgattttgatttgg 42507345  T
Q  418 ttttgtgtctatttaagtatttctc 442  Q
    | |||||||| | ||||||||||||    
T  42507346 tattgtgtctttataagtatttctc 42507370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 319 - 442
Target Start/End: Complemental strand, 43793278 - 43793155
Alignment:
Q  319 aaaaagtatgaaagagaaaagaattaaataatatatatttttgaaataattaaatgatagatattttaatgagtgtatgtctaaatgattttgatttagt 418  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| | ||||||||||  || ||||||||||||||||||||    
T  43793278 aaaaagtatgaaagagaaaagaattaaatattatatctttttgaaataattaaatgatagatgtattaatgagtgcgtgcctaaatgattttgatttagt 43793179  T
Q  419 tttgtgtctatttaagtatttctc 442  Q
      ||| || ||  |||||||||||    
T  43793178 gatgtatccatacaagtatttctc 43793155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 321 - 417
Target Start/End: Original strand, 39904855 - 39904950
Alignment:
Q  321 aaagtatgaaagagaaaagaattaaataatatatatttttgaaataattaaatgatagatattttaatgagtgtatgtctaaatgattttgatttag 417  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||| | || | |||   ||||| |||||||| || |||||| ||||||||||||    
T  39904855 aaagcatgaaagggaaaagaattaaataatatatatttttgaaatagtaaagtaatatgaatttt-atgagtgtgtgcctaaataattttgatttag 39904950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 280 - 439
Target Start/End: Original strand, 8164444 - 8164603
Alignment:
Q  280 gcataaaaatgagtcatttaaacacacacacataatgagaaaaagtatgaaagagaaaagaattaaataatatatatttttgaaataattaaatgataga 379  Q
    ||||||| ||| |||||||| |||| |||||||||    ||||||||||||||||||| ||||| || ||||||  ||||||||||||||||| ||||||    
T  8164444 gcataaatatgtgtcatttagacacgcacacataaaagaaaaaagtatgaaagagaaaggaattcaaaaatatacctttttgaaataattaaaggataga 8164543  T
Q  380 tattttaatgagtgtatgtctaaatgattttgatttagttttgtgtctatttaagtattt 439  Q
    ||||||||| | ||| || |||||  |||||||||| || ||||||| || |||||||||    
T  8164544 tattttaataaatgtgtgcctaaaaaattttgatttggtgttgtgtccatataagtattt 8164603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 320 - 443
Target Start/End: Original strand, 16611094 - 16611217
Alignment:
Q  320 aaaagtatgaaagagaaaagaattaaataatatatatttttgaaataattaaatgatagatattttaatgagtgtatgtctaaatgattttgatttagtt 419  Q
    |||||| |||||||||||  ||||||  ||||||| ||||||||||||||||||||||||||||||||||| | | || |||||||||||| |||| |||    
T  16611094 aaaagtgtgaaagagaaagaaattaataaatatatctttttgaaataattaaatgatagatattttaatgaatatgtgcctaaatgattttaatttggtt 16611193  T
Q  420 ttgtgtctatttaagtatttctcc 443  Q
    ||||||  ||  ||||||||||||    
T  16611194 ttgtgttcatacaagtatttctcc 16611217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 568 - 625
Target Start/End: Complemental strand, 12751113 - 12751056
Alignment:
Q  568 agtttgatatatatatcaatgattaattacacacaaataaaaagcaaacagacaacaa 625  Q
    |||| ||| |||||||||||||||||||||||| ||||| ||||||||| ||||||||    
T  12751113 agttagatttatatatcaatgattaattacacataaatagaaagcaaactgacaacaa 12751056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Complemental strand, 13520523 - 13520482
Alignment:
Q  335 aaaagaattaaataatatatatttttgaaataattaaatgat 376  Q
    |||| |||||||||||||||||||||||||||||| ||||||    
T  13520523 aaaataattaaataatatatatttttgaaataatttaatgat 13520482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Complemental strand, 13610058 - 13610017
Alignment:
Q  335 aaaagaattaaataatatatatttttgaaataattaaatgat 376  Q
    |||| |||||||||||||||||||||||||||||| ||||||    
T  13610058 aaaataattaaataatatatatttttgaaataatttaatgat 13610017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 388
Target Start/End: Complemental strand, 465086 - 465027
Alignment:
Q  329 aaagagaaaagaattaaataatatatatttttgaaataattaaatgatagatattttaat 388  Q
    ||||||||||||||| ||  |||| | |||||||||||||||||| |||||||| |||||    
T  465086 aaagagaaaagaattgaactatatttttttttgaaataattaaataatagatatgttaat 465027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 342 - 384
Target Start/End: Complemental strand, 34198269 - 34198227
Alignment:
Q  342 ttaaataatatatatttttgaaataattaaatgatagatattt 384  Q
    ||||||||||||||||||| |||||||||||| ||| ||||||    
T  34198269 ttaaataatatatattttttaaataattaaattatatatattt 34198227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 43468227 - 43468185
Alignment:
Q  335 aaaagaattaaataatatatatttttgaaataattaaatgata 377  Q
    |||||||||||||| | ||||||||| ||||||||||||||||    
T  43468227 aaaagaattaaatattgtatatttttaaaataattaaatgata 43468185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 340 - 377
Target Start/End: Original strand, 42987826 - 42987863
Alignment:
Q  340 aattaaataatatatatttttgaaataattaaatgata 377  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  42987826 aattaaataatatatatttttaaaataactaaatgata 42987863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 12748395 - 12748443
Alignment:
Q  342 ttaaataatatatatttttgaaataattaaatgatagatattttaatga 390  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  12748395 ttaaaaaatatatctttttgaaataattaaatgatagatattttaatga 12748443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 17706734 - 17706677
Alignment:
Q  359 ttgaaataattaaatgatagatattttaatgagtgtatgtctaaatgattttgattta 416  Q
    |||||||||||||| ||| ||||||||||| ||| | |||||||||||||||||||||    
T  17706734 ttgaaataattaaaagattgatattttaataagtatgtgtctaaatgattttgattta 17706677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 366
Target Start/End: Complemental strand, 17706825 - 17706761
Alignment:
Q  301 acacacacacataatgagaaaaagtatgaaagagaaaagaattaaataatatatatttttgaaata 366  Q
    |||| |||||||| ||  ||||||||||||||| |||| ||||||||||||||| |||||||||||    
T  17706825 acactcacacatagtggaaaaaagtatgaaagataaaataattaaataatatat-tttttgaaata 17706761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 13164641 - 13164684
Alignment:
Q  335 aaaagaattaaataatatatatttttgaaataattaaatgatag 378  Q
    |||||||||||||||||||||||||  | |||||||||||||||    
T  13164641 aaaagaattaaataatatatattttaaatataattaaatgatag 13164684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 293 - 367
Target Start/End: Complemental strand, 5267289 - 5267220
Alignment:
Q  293 tcatttaaacacacacacataatgagaaaaagtatgaaagagaaaagaattaaataatatatatttttgaaataa 367  Q
    ||||||||||| ||||||||||  | ||||| |||||||   |||| ||||||||||||| ||||||||||||||    
T  5267289 tcatttaaacatacacacataa--ataaaaaatatgaaa---aaaataattaaataatatctatttttgaaataa 5267220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 319 - 439
Target Start/End: Original strand, 51726124 - 51726243
Alignment:
Q  319 aaaaagtatgaaagagaaaagaattaaataatatatatttttgaaataattaaatgatagatattttaatgagtgtatgtctaaatgattttgatttagt 418  Q
    ||||| |||||||||||||| |||||||||| || ||||||| |||||  |||||||||  |||||| ||| || | ||||||||||| ||| |||||      
T  51726124 aaaaaatatgaaagagaaaataattaaataacatgtatttttaaaatagataaatgatatgtatttt-atgcgtatgtgtctaaatgactttaatttaag 51726222  T
Q  419 tttgtgtctatttaagtattt 439  Q
    |||||| ||||  ||||||||    
T  51726223 tttgtgactatacaagtattt 51726243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 327 - 370
Target Start/End: Original strand, 11086260 - 11086303
Alignment:
Q  327 tgaaagagaaaagaattaaataatatatatttttgaaataatta 370  Q
    ||||||| ||| |||||||||||||||||||||| |||||||||    
T  11086260 tgaaagaaaaatgaattaaataatatatatttttaaaataatta 11086303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 377
Target Start/End: Complemental strand, 24635596 - 24635538
Alignment:
Q  318 gaaaaagtatgaaagagaaaagaattaaataatatatatttttgaaataattaaatgata 377  Q
    ||||||||||  || |||||||||||| ||||||| ||||||| ||||||||||||||||    
T  24635596 gaaaaagtatagaaaagaaaagaattatataatatctattttt-aaataattaaatgata 24635538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 37361477 - 37361435
Alignment:
Q  329 aaagagaaaagaattaaataatatatatttttgaaataattaa 371  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||    
T  37361477 aaagataaaagaattaaataatatgtattttttaaataattaa 37361435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 330 - 375
Target Start/End: Complemental strand, 13877502 - 13877457
Alignment:
Q  330 aagagaaaagaattaaataatatatatttttgaaataattaaatga 375  Q
    ||||||||| ||||||||||||| ||| ||| ||||||||||||||    
T  13877502 aagagaaaataattaaataatatctatgttttaaataattaaatga 13877457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 20088122 - 20088073
Alignment:
Q  328 gaaagagaaaagaattaaataatatatatttttgaaataattaaatgata 377  Q
    |||||| |||||||||||||||| | ||||||| || |||||||||||||    
T  20088122 gaaagaaaaaagaattaaataatgtgtatttttcaactaattaaatgata 20088073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 333 - 385
Target Start/End: Complemental strand, 44582593 - 44582541
Alignment:
Q  333 agaaaagaattaaataatatatatttttgaaataattaaat-gatagatatttt 385  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||| |||||||    
T  44582593 agaaaagaattaaataatatata-ttttaaaataattaaatcgatatatatttt 44582541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 52431394 - 52431341
Alignment:
Q  319 aaaaagtatgaaagagaaaagaattaaataatatatatttttgaaataattaaa 372  Q
    ||||| |||||||||||||| ||||||||||||| |||| || ||||| |||||    
T  52431394 aaaaaatatgaaagagaaaataattaaataatatgtattcttaaaatagttaaa 52431341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University