View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15116_low_4 (Length: 528)

Name: NF15116_low_4
Description: NF15116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15116_low_4
NF15116_low_4
[»] chr7 (5 HSPs)
chr7 (142-513)||(36415801-36416172)
chr7 (26-99)||(36416218-36416291)
chr7 (225-285)||(31459418-31459478)
chr7 (247-285)||(26971405-26971443)
chr7 (220-277)||(44453604-44453661)
[»] chr1 (1 HSPs)
chr1 (242-285)||(14118279-14118322)
[»] chr6 (2 HSPs)
chr6 (243-285)||(6355753-6355795)
chr6 (288-317)||(17131268-17131297)
[»] chr2 (2 HSPs)
chr2 (243-285)||(28185951-28185993)
chr2 (291-328)||(42804684-42804721)
[»] chr5 (1 HSPs)
chr5 (220-277)||(7765258-7765315)
[»] chr4 (1 HSPs)
chr4 (225-298)||(39791212-39791285)


Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 142 - 513
Target Start/End: Complemental strand, 36416172 - 36415801
Alignment:
Q  142 gggctcaagagcccaattatcatgaatcgtgcagcacatataatgcactcaacaattgtttcggttannnnnnnnctcttcatcctataagtttctttta 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||         | || ||||||||| |||||||||    
T  36416172 gggctcaagagcccaattatcatgaatcgtgcagcacatataatgcactcaacaattctttcggttataatttt--tttttatcctataaatttctttta 36416075  T
Q  242 cgtcctattcgaattttaaaatcctaaatatttcaatgtattttaaaggtgtttatgccgttcaaattctataatctgaactt--catataccgtacgaa 339  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||  ||||| |||||||||    
T  36416074 cgtcctattcgaattttaaaatcctaaatatttcaacgtattttaaaggtgtttatgccgttcaaattctataatctaaaattttcatatgccgtacgaa 36415975  T
Q  340 aaactcgtagaatnnnnnnngaaactgtcattttttatggagtcttctgaacattctctagagcattcatcgtaaacgttgttatgggaaaccctaaacc 439  Q
    |||||||||||||       ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36415974 aaactcgtagaatgaaaaaagaaaccgtctttttttatggagtcttccgaacattctctagagcattcatcgtaaacgttgttatgggaaaccctaaacc 36415875  T
Q  440 catagtgaaattaaaatataatgccgcaccaagagcttatgcgaccattactaatttagataggtgaagatttt 513  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36415874 catagtgaaattaaaatctaatgccgcaccaagagcttatgcgaccattactaatttagataggtgaagatttt 36415801  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 36416291 - 36416218
Alignment:
Q  26 cttatagccaaacaccctcttgagtgaacataaactatcctaccatacggttttgaattttgatctctcctaac 99  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36416291 cttatagccaaacacactcttgagtgaacataaactatcctaccatacggttttgaattttgatctctcctaac 36416218  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 31459418 - 31459478
Alignment:
Q  225 cctataagtttcttttacgtcctattcgaattttaaaatcctaaatatttcaatgtatttt 285  Q
    |||||||||||||  |  ||||||||| ||||||||||||| ||||||||||| |||||||    
T  31459418 cctataagtttctcgtgtgtcctattcaaattttaaaatccgaaatatttcaacgtatttt 31459478  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 285
Target Start/End: Complemental strand, 26971443 - 26971405
Alignment:
Q  247 tattcgaattttaaaatcctaaatatttcaatgtatttt 285  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  26971443 tattcgagttttaaaatccgaaatatttcaatgtatttt 26971405  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 44453604 - 44453661
Alignment:
Q  220 ttcatcctataagtttcttttacgtcctattcgaattttaaaatcctaaatatttcaa 277  Q
    |||| |||||||||||||  ||||||||||||| ||| |||||| | |||||||||||    
T  44453604 ttcaccctataagtttctcgtacgtcctattcggattctaaaattcgaaatatttcaa 44453661  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 285
Target Start/End: Complemental strand, 14118322 - 14118279
Alignment:
Q  242 cgtcctattcgaattttaaaatcctaaatatttcaatgtatttt 285  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||    
T  14118322 cgtcctatttgaattttaaaatccgaaatatttcaatgtgtttt 14118279  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 285
Target Start/End: Complemental strand, 6355795 - 6355753
Alignment:
Q  243 gtcctattcgaattttaaaatcctaaatatttcaatgtatttt 285  Q
    |||||||| |||||||||||||  |||||||||||||||||||    
T  6355795 gtcctatttgaattttaaaatctaaaatatttcaatgtatttt 6355753  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 317
Target Start/End: Complemental strand, 17131297 - 17131268
Alignment:
Q  288 aggtgtttatgccgttcaaattctataatc 317  Q
    ||||||||||||||||||||||||||||||    
T  17131297 aggtgtttatgccgttcaaattctataatc 17131268  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 28185951 - 28185993
Alignment:
Q  243 gtcctattcgaattttaaaatcctaaatatttcaatgtatttt 285  Q
    |||| ||||||||| |||||||| |||||||||||||||||||    
T  28185951 gtcccattcgaattataaaatccgaaatatttcaatgtatttt 28185993  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 42804684 - 42804721
Alignment:
Q  291 tgtttatgccgttcaaattctataatctgaacttcata 328  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  42804684 tgtttatgccgatcaaattctataatctgaactgcata 42804721  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 7765315 - 7765258
Alignment:
Q  220 ttcatcctataagtttcttttacgtcctattcgaattttaaaatcctaaatatttcaa 277  Q
    |||||||||| ||||| || | |||| ||||| ||||||||||||| |||||||||||    
T  7765315 ttcatcctatgagttttttgtgcgtcttattcaaattttaaaatccgaaatatttcaa 7765258  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 298
Target Start/End: Original strand, 39791212 - 39791285
Alignment:
Q  225 cctataagtttcttttacgtcctattcgaattttaaaatcctaaatatttcaatgtattttaaaggtgtttatg 298  Q
    |||||||||||||  | ||||||||| ||||| |||||||| ||||||||||| || |||| ||| | ||||||    
T  39791212 cctataagtttctcatgcgtcctatttgaattctaaaatccgaaatatttcaacgtgttttgaagatttttatg 39791285  T

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