View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15116_low_5 (Length: 494)
Name: NF15116_low_5
Description: NF15116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15116_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 11 - 478
Target Start/End: Complemental strand, 53552416 - 53551949
Alignment:
| Q |
11 |
caattccaacactttatggttacaaaatgtcacaaactatatttccaattcctgacagtttgatagtaacatatttcaacaaaggatctttttatctggg |
110 |
Q |
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| T |
53552416 |
caattccaacactttatggttacaaaatgtcacaaactatatttccaattcctgacagtttgatagtaacatatttcaacataggatctttttatctggg |
53552317 |
T |
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| Q |
111 |
cttaaaaaatctgtaactgatatagtcatctatggataatttctatcatttgtttaagcacacctgcacaaaggtcataagtgtgcagatctacaattat |
210 |
Q |
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| T |
53552316 |
cttaaaaaatctgtaactgatatagtcatctatggataatttctatcatttgtttaagcacacctgcacaaagatcataagtgtgcagatctacaattat |
53552217 |
T |
|
| Q |
211 |
caattccttaaaaataaaagagtatcattatttgtcccctgattaaagtatctatggtgagaattatttcattattatgctaaaaacatgctcctatttt |
310 |
Q |
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| T |
53552216 |
caattccttaaaaataaaagagtatcattatttgtcccctgattaaagtatctatggtgagaattattttattattatgctaaaaacatgctcctatttt |
53552117 |
T |
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| Q |
311 |
acctaaacatcgttcaaac-nnnnnnnnnnnctcatgatatagatttctttgtcaaggatatggatattcatgtaaaggatgtctgtcctttnnnnnnnn |
409 |
Q |
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| T |
53552116 |
acctaaacatcgttcaaacaaaaaaaaaaaactcatgatatagatttctttgtcaaggatatggatattcatgt-aaggatgtctgtcctttaaaaaaaa |
53552018 |
T |
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| Q |
410 |
tgtaaaggatgtttgtgttctccatgggaggcttactttgtttattaaaaggattatttacttcattaa |
478 |
Q |
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| T |
53552017 |
tgtaaaggatgtttgtgttctccatgggaggcttactttgtttattaaaaagattatttatttcattaa |
53551949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 477
Target Start/End: Original strand, 13929576 - 13929706
Alignment:
| Q |
350 |
tagatttctttgtcaaggatatggatattcatgtaaaggatgtctgtccttt---nnnnnnnntgtaaaggatgtttgtgttctccatgggaggcttact |
446 |
Q |
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|||||||||||||||| ||| ||||||||||||||| |||||| |||| ||| |||||| ||||||||||||| ||||||||||||||| |
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| T |
13929576 |
tagatttctttgtcaatgatttggatattcatgtaatggatgtttgtcatttaaaaaacaaaatgtaaatgatgtttgtgttccgcatgggaggcttact |
13929675 |
T |
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| Q |
447 |
ttgtttattaaaaggattatttacttcatta |
477 |
Q |
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| T |
13929676 |
ttatttattgaaaatattattgatttcatta |
13929706 |
T |
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