View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15116_low_7 (Length: 414)
Name: NF15116_low_7
Description: NF15116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15116_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 47254592 - 47254941
Alignment:
| Q |
1 |
cagcatcagatttctttggcctaagattcttctgagtttggggttttggagaaacattgagatttggtaaattgggaagatcacccaaaacaaccctttg |
100 |
Q |
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| T |
47254592 |
cagcatcagatttctttggcctaagtttcttctgagtttggggtttgggagaaacattgagatttggtaaattgggaagatcacccaaaacaaccctttg |
47254691 |
T |
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| Q |
101 |
tttcttattgttaagaacaattggttcagcgttagccctcttctttgaagcacgagtctccatctcagctcaggttgaaggagagataagggtttgtgaa |
200 |
Q |
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| T |
47254692 |
tttcttattgttaagaacaattggttcagcgttagccctcttctttgaagcaggagtctccatctcagctcagattgaaggagagataagggtttgtgaa |
47254791 |
T |
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| Q |
201 |
ctatgatgatggaagagatgaagaaatgagacagtgacatgttgtttatataggaatgagatttggtcggaaattttgacagaaagagcggtttcagaca |
300 |
Q |
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| T |
47254792 |
ctatgatgatggaagagatgaagaaatgag--agtgacatggtgtttatataggaatgagatttggtcggaaattttgacagaaagagcggtttcagaca |
47254889 |
T |
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| Q |
301 |
aacttttcagaaaatgaaaatgttggcgctattgaagttgtcttgaaaattt |
352 |
Q |
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| T |
47254890 |
aacttttcagaaaatgaaaatgttggcgctattgaagttgtcttgaaaattt |
47254941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 343 - 405
Target Start/End: Original strand, 47254965 - 47255027
Alignment:
| Q |
343 |
ttgaaaatttgggtactttttaattttaatgaaattttcgtgttgccgcgccgatgttcattt |
405 |
Q |
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| T |
47254965 |
ttgaaaatttgggtactttttaattttaatgaaattttcgtgttgccgcgccgatattcattt |
47255027 |
T |
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