View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15117_low_1 (Length: 791)
Name: NF15117_low_1
Description: NF15117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15117_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 1864998 - 1864476
Alignment:
| Q |
1 |
catataagtgtcagaaagtaagaagaaacctactagaattgatatgtgatccattaaaatttggtggtgatggaacaacgtgatactgaaatccggtaga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1864998 |
catataagtgtcagaaagtaagaagaaacctactagaattgatatgtgatccattaaaatttggtggtgatggaacaacgtgatactgaaatccgataga |
1864899 |
T |
|
| Q |
101 |
tgtaggaaatgatgaagcttttatttgtttcgagtccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgttgcttcaacgccaat |
200 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1864898 |
tgtaggaaatgatgaaacttttatttgttccgagtccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgttgcttcaacgccaat |
1864799 |
T |
|
| Q |
201 |
cttgtgtaataagcttgaaagaactcaggatttgattctttaagcttttgccaaactaaaaagacgagaaggaaaaagaagcttaataaaacaattgcgg |
300 |
Q |
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| T |
1864798 |
cttgtgtaataagcttgaaagaactcaggattttcttctttaagcttttgccaaactaaaaagacgagaaggaaaaagaaacttaataaaactattgcgg |
1864699 |
T |
|
| Q |
301 |
tttttattataacaaaaatgtaaaaatcgatgggatggatatacattgaaagtctataaattaaattatcaattgcaacttatgtgtgtgtg------tt |
394 |
Q |
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| T |
1864698 |
tttttattataacaaaaatgtaaaaatcgttgggatggatatacattgaaagtctataaattaaattatcaattgcaacttgtgtgtgtgtgtgtgtttt |
1864599 |
T |
|
| Q |
395 |
tatttatcaacctcttaaaaatgatagtccaaatattaaaccatagcaattataaagacagtgatggaaaatgtaagattaaataaacaagaattgaaaa |
494 |
Q |
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| T |
1864598 |
tatttatcaacctcttaaaaatgatagtccaaatattaaaccatagcaattataaaggcagtgatggaaaatgtaagattaaataaacaagaattgaaaa |
1864499 |
T |
|
| Q |
495 |
ttaaataaaacatgttacattta |
517 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
1864498 |
ttaaataaaacatgttacattta |
1864476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 516 - 774
Target Start/End: Complemental strand, 1863685 - 1863427
Alignment:
| Q |
516 |
taatgaggcatataaatttgttgttagcaatttctcatacatgtagggtgaaccaaacagaatatagaataagtaagagatttcaggaaagggaaatgag |
615 |
Q |
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| T |
1863685 |
taatgaggcatataaatttgttgttagcaatttctcatacatgtagggtgaaccaaacagaatatagaataagtaagagatttcaggaaagggaaatgag |
1863586 |
T |
|
| Q |
616 |
ggaaaagaaggaacacaattacgcaacactattggtaaacctttgataacttatcaagtcttaatattaacccaactatgaaaagtcatgtgctcctcga |
715 |
Q |
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| T |
1863585 |
ggaaaagaaggaacacaattacgcaacactattggtaaacctttgataacttatcaagtcttaatattaacccaactatgaaaagtcatgtgctcctcga |
1863486 |
T |
|
| Q |
716 |
acctagctactgattcgaaatattgttggtacatagccacactatagatatgttacatt |
774 |
Q |
| |
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| T |
1863485 |
acctagctactgattcgaaatattgttgttacatagccacactatagatatgttacatt |
1863427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 132 - 262
Target Start/End: Original strand, 35441487 - 35441617
Alignment:
| Q |
132 |
gagtccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgttgcttcaacgccaatcttgtgtaataagcttgaaagaactcaggat |
231 |
Q |
| |
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||||||||||||| |||| ||| ||||||||| ||||| | || |||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
35441487 |
gagtccattaattctttttgtttttccaacaattcattgaatttctctatttgttgcttcaacgccaatcttgtataataagctttgaagaactcaggat |
35441586 |
T |
|
| Q |
232 |
ttgattctttaagcttttgccaaactaaaaa |
262 |
Q |
| |
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|| ||| |||||||||||||||||| |||| |
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| T |
35441587 |
tttgttcattaagcttttgccaaactgaaaa |
35441617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 132 - 285
Target Start/End: Original strand, 35449928 - 35450081
Alignment:
| Q |
132 |
gagtccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgttgcttcaacgccaatcttgtgtaataagcttgaaagaactcaggat |
231 |
Q |
| |
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||||| ||||||| ||||| ||||| || ||| ||||||| | || ||||| | |||||||||||||||||| || |||||||| |||||||| |||| |
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| T |
35449928 |
gagtctattaattccttttgtttatgcattaatttgttgaattcctctatttgcttcttcaacgccaatcttgtatagtaagcttggaagaactctggat |
35450027 |
T |
|
| Q |
232 |
ttgattctttaagcttttgccaaactaaaaagacgagaaggaaaaagaagctta |
285 |
Q |
| |
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|| ||||| |||| ||||||||||| |||||| || |||||||||| |||| |
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| T |
35450028 |
tttgttcttcaagcctttgccaaactgaaaagatgaaggggaaaaagaaactta |
35450081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 5 - 262
Target Start/End: Original strand, 51575705 - 51575962
Alignment:
| Q |
5 |
taagtgtcagaaagtaagaagaaacctactagaattgatatgtgatccattaaaatttggtggtgatggaacaacgtgatactgaaatccggtagatgta |
104 |
Q |
| |
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||||||| ||||| ||||||||| | |||||| || |||||||||||||||| ||||| || ||||||||||||| |||| |||||||| |||| || |
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| T |
51575705 |
taagtgtgagaaaataagaagaatcttactagcatggatatgtgatccattagaattttgtagtgatggaacaacatgatgatgaaatccattagagata |
51575804 |
T |
|
| Q |
105 |
ggaaatgatgaagcttttatttgtttcgagtccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgttgcttcaacgccaatcttg |
204 |
Q |
| |
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|| | |||| | || | |||||| |||| || |||||| | ||| || |||| ||||| ||| | |||||||||||||| | ||| |||||||||| |
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| T |
51575805 |
ggtagagatgcaactatggtttgttccgagaccgttaattgcctttgattctccagcaatgcattgtattgttcaatttgttgatacaaggccaatcttg |
51575904 |
T |
|
| Q |
205 |
tgtaataagcttgaaagaactcaggatttgattctttaagcttttgccaaactaaaaa |
262 |
Q |
| |
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| |||||| ||| |||||| || |||| | |||||||| | |||||||||||||| |
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| T |
51575905 |
tataataatctttgaagaacgcatcattttctgctttaagcctatgccaaactaaaaa |
51575962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 464 - 521
Target Start/End: Original strand, 51576228 - 51576285
Alignment:
| Q |
464 |
aatgtaagattaaataaacaagaattgaaaattaaataaaacatgttacatttaatga |
521 |
Q |
| |
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||||| ||||||| ||||||||||||||||||||| |||||||||| ||| ||||||| |
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| T |
51576228 |
aatgtgagattaagtaaacaagaattgaaaattaattaaaacatgtaacaattaatga |
51576285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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