View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15118_high_4 (Length: 510)

Name: NF15118_high_4
Description: NF15118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15118_high_4
NF15118_high_4
[»] chr1 (20 HSPs)
chr1 (1-492)||(10232803-10233294)
chr1 (1-50)||(34298428-34298477)
chr1 (1-41)||(14332660-14332700)
chr1 (3-65)||(10474997-10475059)
chr1 (1-65)||(22881634-22881698)
chr1 (2-50)||(40285673-40285721)
chr1 (9-50)||(6427342-6427383)
chr1 (9-50)||(9449034-9449075)
chr1 (1-50)||(9828036-9828085)
chr1 (9-50)||(10572615-10572656)
chr1 (1-38)||(12713345-12713382)
chr1 (1-38)||(12717436-12717473)
chr1 (1-50)||(36878453-36878502)
chr1 (9-50)||(36905989-36906030)
chr1 (1-50)||(42325552-42325601)
chr1 (2-50)||(2896140-2896188)
chr1 (1-37)||(7918229-7918265)
chr1 (1-41)||(25361887-25361927)
chr1 (1-41)||(39953164-39953204)
chr1 (1-41)||(41877488-41877528)
[»] chr4 (8 HSPs)
chr4 (1-50)||(36635316-36635365)
chr4 (1-43)||(7214540-7214582)
chr4 (1-41)||(17446072-17446112)
chr4 (7-42)||(21658838-21658873)
chr4 (10-51)||(1074789-1074830)
chr4 (9-41)||(1747213-1747245)
chr4 (1-41)||(5775376-5775416)
chr4 (1-41)||(8423736-8423776)
[»] chr5 (7 HSPs)
chr5 (1-39)||(35017040-35017078)
chr5 (1-51)||(12927645-12927695)
chr5 (4-50)||(26609345-26609391)
chr5 (153-194)||(22214924-22214965)
chr5 (1-50)||(27144455-27144504)
chr5 (10-50)||(17123040-17123080)
chr5 (1-41)||(36838544-36838584)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-50)||(90835-90884)
[»] chr8 (6 HSPs)
chr8 (1-50)||(39954297-39954346)
chr8 (1-35)||(14731719-14731753)
chr8 (1-85)||(13844614-13844692)
chr8 (1-50)||(15816147-15816196)
chr8 (1-41)||(7658464-7658504)
chr8 (1-41)||(34897086-34897126)
[»] chr6 (13 HSPs)
chr6 (1-50)||(7265611-7265660)
chr6 (9-50)||(30866170-30866211)
chr6 (1-41)||(25096424-25096464)
chr6 (1-48)||(31579243-31579290)
chr6 (148-190)||(4381985-4382027)
chr6 (1-35)||(7086802-7086836)
chr6 (1-35)||(8805590-8805624)
chr6 (1-51)||(10842523-10842573)
chr6 (1-50)||(10770692-10770741)
chr6 (149-194)||(14933027-14933072)
chr6 (1-50)||(19040344-19040393)
chr6 (1-50)||(21395326-21395374)
chr6 (1-41)||(13360390-13360430)
[»] chr2 (6 HSPs)
chr2 (1-42)||(2665906-2665947)
chr2 (1-35)||(18889609-18889643)
chr2 (1-51)||(21616753-21616803)
chr2 (1-50)||(31018582-31018631)
chr2 (1-34)||(36281693-36281726)
chr2 (2-42)||(2331794-2331834)
[»] chr3 (11 HSPs)
chr3 (1-52)||(12703997-12704048)
chr3 (1-35)||(11313818-11313852)
chr3 (1-35)||(27277856-27277890)
chr3 (1-35)||(49505172-49505206)
chr3 (1-50)||(2620071-2620120)
chr3 (1-50)||(14840309-14840358)
chr3 (1-46)||(17005637-17005682)
chr3 (1-34)||(32804558-32804591)
chr3 (1-41)||(11493379-11493419)
chr3 (9-41)||(24633767-24633799)
chr3 (1-41)||(55401076-55401116)
[»] chr7 (11 HSPs)
chr7 (1-50)||(9408352-9408401)
chr7 (1-50)||(20549783-20549832)
chr7 (1-50)||(22868034-22868083)
chr7 (1-50)||(27945033-27945082)
chr7 (1-50)||(32308112-32308161)
chr7 (9-62)||(45056927-45056980)
chr7 (1-41)||(15902823-15902863)
chr7 (1-41)||(27093431-27093471)
chr7 (1-41)||(27184830-27184870)
chr7 (2-50)||(29763193-29763241)
chr7 (1-41)||(29787387-29787427)
[»] scaffold0085 (1 HSPs)
scaffold0085 (9-41)||(26394-26426)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-41)||(17767-17807)


Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 10233294 - 10232803
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtccaagtcgtgtccggttctgtattcgtgcttcacagggaccagattgttga 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10233294 ttacactgaattatgtgattttctcaatttattagtggtgttggtgtgtccaagtcgtgtccggttctgtatccgtgcttcacagggaccagattgttga 10233195  T
Q  101 gaaagtgataatttaggggctaaatttattgttaactgatttaatagttatctgacaacattttgtacagaatagcgcattgcagaacaatagctatgct 200  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10233194 gaaagtgataatttaggggttaaatttattgttgactgatttaatagttatctgacaacattttgtacagaatagcgcattgcagaacaatagctatgct 10233095  T
Q  201 atagcgctactatatgtgcctattcaacaacagtcgcgacagttaaacctaataatcgaacttcattgagcaattcaattttccaattccaataatttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10233094 atagcgctactatatgtgcctattcaacaacagtcgcgacagttaaacctaataatcgaacttcattgaacaattcaattttccaattccaataatttca 10232995  T
Q  301 tgcatggttactgtcaaaaccgttagagaattgagacatggctacattgacagaaaatcacagtaaataacaaaacctaacaaacaaaacccgaattcag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10232994 tgcatggttactgtcaaaaccgttagagaattgagacatggctacattgacagaaaatcacagtaaataacaaaacctaacaaacaaaacccgaattcag 10232895  T
Q  401 caatgtaaatcgaagaaaaacgcttacagaaccgattcgagcttcaagcgcatggttcgctttgggaacctgctcaaccgcagcggacgagg 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10232894 caatgtaaatcgaagaaaaacgcttacagaaccgattcgagcttcaagcgcatggttcgctttgggaacctgctcaatcgcagcggacgagg 10232803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 34298477 - 34298428
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||| ||||||||||||||||||| ||||||||||||| ||||||||    
T  34298477 ttacactgaattatgtgattttctcaaattattagtggtgtcggtgtgtc 34298428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14332660 - 14332700
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgt 41  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  14332660 ttacactaaattatgtgattttctcaaattattagtggtgt 14332700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 10474997 - 10475059
Alignment:
Q  3 acactaaattatgtgattttctcaatttattagtggtgttggtgtgtccaagtcgtgtccggt 65  Q
    ||||| ||||||||||||||||||| ||||||| ||||| || ||||| | ||||||||||||    
T  10474997 acactgaattatgtgattttctcaagttattagcggtgtcggcgtgtcaatgtcgtgtccggt 10475059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 22881634 - 22881698
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtccaagtcgtgtccggt 65  Q
    |||||||||||||||||||||| |||| |||||||| |||| || |||||   ||||||||||||    
T  22881634 ttacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtcgtgtccggt 22881698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 40285673 - 40285721
Alignment:
Q  2 tacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    |||||| ||||||| ||||||||||| ||||||| ||||||||||||||    
T  40285673 tacactgaattatgcgattttctcaaattattagcggtgttggtgtgtc 40285721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 6427383 - 6427342
Alignment:
Q  9 aattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||||||||||||||| ||||||| |||||||| |||||    
T  6427383 aattatgtgattttctcaaattattagcggtgttggcgtgtc 6427342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 9449034 - 9449075
Alignment:
Q  9 aattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    |||||||||||||| |||| |||||| |||||||||||||||    
T  9449034 aattatgtgattttttcaaattattaatggtgttggtgtgtc 9449075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 9828085 - 9828036
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||| |||||||||||||| |||| ||||||||||||| || |||||    
T  9828085 ttacactgaattatgtgattttatcaaattattagtggtgtcggcgtgtc 9828036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 10572615 - 10572656
Alignment:
Q  9 aattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||||||||||||||| ||||||||||||| || |||||    
T  10572615 aattatgtgattttctcaaattattagtggtgtcggcgtgtc 10572656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12713345 - 12713382
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtgg 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  12713345 ttacactaaattatgtgattttcttaaattattagtgg 12713382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12717436 - 12717473
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtgg 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  12717436 ttacactaaattatgtgattttcttaaattattagtgg 12717473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 36878502 - 36878453
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||| ||||||||||||||||||| ||||||| ||||| || |||||    
T  36878502 ttacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtc 36878453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 36906030 - 36905989
Alignment:
Q  9 aattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||||||||||||||  ||||||| ||||||||||||||    
T  36906030 aattatgtgattttctcagattattagcggtgttggtgtgtc 36905989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 42325601 - 42325552
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||| |||||||| |||||||||| ||||||  ||||||||||||||    
T  42325601 ttacactgaattatgtcattttctcaaattattatcggtgttggtgtgtc 42325552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 2896140 - 2896188
Alignment:
Q  2 tacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    |||||| ||||||||||||||||||| ||||||| ||||| || |||||    
T  2896140 tacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtc 2896188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7918229 - 7918265
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtg 37  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  7918229 ttacactgaattatgtgattttctcaaattattagtg 7918265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25361927 - 25361887
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgt 41  Q
    ||||||| ||||||||||||||||||| |||| ||||||||    
T  25361927 ttacactgaattatgtgattttctcaaattatcagtggtgt 25361887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39953164 - 39953204
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgt 41  Q
    |||||||||||||||||||||||| || ||||||| |||||    
T  39953164 ttacactaaattatgtgattttctaaaattattagcggtgt 39953204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41877488 - 41877528
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgt 41  Q
    |||||||||||||||| |||||||||| ||||||| |||||    
T  41877488 ttacactaaattatgtaattttctcaaattattagcggtgt 41877528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 36635365 - 36635316
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||| ||||||||||||||||||| |||||||||||||||| |||||    
T  36635365 ttacactgaattatgtgattttctcaaattattagtggtgttggcgtgtc 36635316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7214540 - 7214582
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttg 43  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  7214540 ttacattaaattatgtgattttctcaaattattagtggtgttg 7214582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 17446112 - 17446072
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgt 41  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  17446112 ttacactaaattatgtgattttcttaaattattagtggtgt 17446072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 21658838 - 21658873
Alignment:
Q  7 taaattatgtgattttctcaatttattagtggtgtt 42  Q
    ||||||||||||||||||||| ||||||||||||||    
T  21658838 taaattatgtgattttctcaaattattagtggtgtt 21658873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 1074830 - 1074789
Alignment:
Q  10 attatgtgattttctcaatttattagtggtgttggtgtgtcc 51  Q
    |||||||||||||||||| |||||||||||||  ||||||||    
T  1074830 attatgtgattttctcaaattattagtggtgtcagtgtgtcc 1074789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 1747245 - 1747213
Alignment:
Q  9 aattatgtgattttctcaatttattagtggtgt 41  Q
    ||||||||||||||||||||||||||| |||||    
T  1747245 aattatgtgattttctcaatttattagcggtgt 1747213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 5775376 - 5775416
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgt 41  Q
    ||||||| ||||||||||||||||||| |||||| ||||||    
T  5775376 ttacacttaattatgtgattttctcaaattattaatggtgt 5775416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8423736 - 8423776
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgt 41  Q
    ||||||| ||||||||||||||||||| ||||||| |||||    
T  8423736 ttacactgaattatgtgattttctcaaattattagcggtgt 8423776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35017078 - 35017040
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggt 39  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  35017078 ttacactaaattatgtgattttctcaaattattagtggt 35017040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 12927695 - 12927645
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtcc 51  Q
    |||||||||||||| |||||||||||| ||||||| | ||| |||||||||    
T  12927695 ttacactaaattatatgattttctcaaattattagcgatgtcggtgtgtcc 12927645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 26609391 - 26609345
Alignment:
Q  4 cactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    |||||||| |||||||||| |||| ||||||||||||| ||||||||    
T  26609391 cactaaatcatgtgattttatcaaattattagtggtgtcggtgtgtc 26609345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 22214965 - 22214924
Alignment:
Q  153 tgacaacattttgtacagaatagcgcattgcagaacaatagc 194  Q
    |||||||||||||||| |||||| | ||||||||||||||||    
T  22214965 tgacaacattttgtactgaatagtgtattgcagaacaatagc 22214924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 27144504 - 27144455
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||||||||||||||||| ||||| ||||||| ||||| || |||||    
T  27144504 ttacactaaattatgtgatttcctcaaattattagcggtgtcggcgtgtc 27144455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 17123080 - 17123040
Alignment:
Q  10 attatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    |||||||||||||||||| ||||||| |||||||| |||||    
T  17123080 attatgtgattttctcaaattattagcggtgttggcgtgtc 17123040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 36838584 - 36838544
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgt 41  Q
    |||||||||||||||| |||||||||| ||||||| |||||    
T  36838584 ttacactaaattatgtaattttctcaaattattagcggtgt 36838544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 90884 - 90835
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||| |||||| |||||||||||| |||||| |||||||||||||||    
T  90884 ttacactgaattatatgattttctcaaattattaatggtgttggtgtgtc 90835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 39954297 - 39954346
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||||||||||||||||||||||| ||||||| ||||| || |||||    
T  39954297 ttacactaaattatgtgattttctcaaattattagcggtgtcggcgtgtc 39954346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 14731753 - 14731719
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattag 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  14731753 ttacactaaattatgtgattttctcaaattattag 14731719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 13844614 - 13844692
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtccaagtcgtgtccggttctgtattcgtgcttcacag 85  Q
    ||||||| ||||||||||||||||||| |||||||  |||| || ||||||  ||||||      ||||||||||||||||||||    
T  13844614 ttacactcaattatgtgattttctcaaattattagcagtgtcggcgtgtccgtgtcgtg------tctgtattcgtgcttcacag 13844692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 15816147 - 15816196
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    |||||||||||||||||||||| |||| |||||||| |||| || |||||    
T  15816147 ttacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtc 15816196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7658504 - 7658464
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgt 41  Q
    ||||||| |||||||| |||||||||| |||||||||||||    
T  7658504 ttacactgaattatgtaattttctcaaattattagtggtgt 7658464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34897126 - 34897086
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgt 41  Q
    ||||||| ||||||||||||||||||| ||||||| |||||    
T  34897126 ttacactgaattatgtgattttctcaaattattagcggtgt 34897086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 7265611 - 7265660
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||| ||||||||||||||||||| ||||||| |||||||| |||||    
T  7265611 ttacactgaattatgtgattttctcaaattattagcggtgttggcgtgtc 7265660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 30866170 - 30866211
Alignment:
Q  9 aattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  30866170 aattatgtgattttctcaaattattagcggtgttggtgtgtc 30866211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25096464 - 25096424
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgt 41  Q
    |||||||| |||||||||||||||||| |||||||||||||    
T  25096464 ttacactagattatgtgattttctcaaattattagtggtgt 25096424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31579243 - 31579290
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtg 48  Q
    ||||||| ||||||||||||||||||| ||||||  ||||||||||||    
T  31579243 ttacactgaattatgtgattttctcaaattattaacggtgttggtgtg 31579290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 4381985 - 4382027
Alignment:
Q  148 ttatctgacaacattttgtacagaatagcgcattgcagaacaa 190  Q
    |||| ||||||||||||||||  ||||||||||||||||||||    
T  4381985 ttatttgacaacattttgtactaaatagcgcattgcagaacaa 4382027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 7086836 - 7086802
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattag 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  7086836 ttacactaaattatgtgattttctcaaattattag 7086802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8805590 - 8805624
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattag 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  8805590 ttacactaaattatgtgattttctcaaattattag 8805624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10842573 - 10842523
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtcc 51  Q
    |||||||||||||||||||||| |||| ||||||| ||||| || ||||||    
T  10842573 ttacactaaattatgtgattttttcaaattattagcggtgtcggcgtgtcc 10842523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 10770692 - 10770741
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||| |||||||||||||| |||| |||||||| ||||||| |||||    
T  10770692 ttacactgaattatgtgattttttcaaattattagttgtgttggcgtgtc 10770741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 14933027 - 14933072
Alignment:
Q  149 tatctgacaacattttgtacagaatagcgcattgcagaacaatagc 194  Q
    ||||||||||||||||||||  ||||| | ||||||||||||||||    
T  14933027 tatctgacaacattttgtactaaatagtgtattgcagaacaatagc 14933072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 19040393 - 19040344
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||| ||||||||||||||||||| ||||||| ||||| || |||||    
T  19040393 ttacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtc 19040344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 21395326 - 21395374
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    |||||||||||||||| |||||||||| ||||||| |||||||| |||||    
T  21395326 ttacactaaattatgt-attttctcaaattattagcggtgttggcgtgtc 21395374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13360390 - 13360430
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgt 41  Q
    ||||||| ||||||||||||||||||| ||| |||||||||    
T  13360390 ttacactgaattatgtgattttctcaaattactagtggtgt 13360430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2665906 - 2665947
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgtt 42  Q
    |||||||||||||||||||||||| || ||||||||||||||    
T  2665906 ttacactaaattatgtgattttctaaaattattagtggtgtt 2665947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 18889609 - 18889643
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattag 35  Q
    ||||||| |||||||||||||||||||||||||||    
T  18889609 ttacactgaattatgtgattttctcaatttattag 18889643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 21616803 - 21616753
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtcc 51  Q
    ||||||| ||||||||||||||||||| ||||||| ||||| || ||||||    
T  21616803 ttacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcc 21616753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 31018631 - 31018582
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||||||| |||||||||||| || ||||||| |||||||| |||||    
T  31018631 ttacactaaatcatgtgattttctgaaattattagcggtgttggcgtgtc 31018582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 36281726 - 36281693
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttatta 34  Q
    ||||||||||||||||||||||||||| ||||||    
T  36281726 ttacactaaattatgtgattttctcaaattatta 36281693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 2331834 - 2331794
Alignment:
Q  2 tacactaaattatgtgattttctcaatttattagtggtgtt 42  Q
    |||||| ||||||||||||||||||| |||||| |||||||    
T  2331834 tacactgaattatgtgattttctcaaattattaatggtgtt 2331794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12704048 - 12703997
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtcca 52  Q
    ||||||| ||||||||| ||||||||| ||||||||||||| || |||||||    
T  12704048 ttacactgaattatgtgcttttctcaaattattagtggtgtcggcgtgtcca 12703997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11313818 - 11313852
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattag 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  11313818 ttacactaaattatgtgattttctcaaattattag 11313852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 27277856 - 27277890
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattag 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  27277856 ttacactaaattatgtgattttctcaaattattag 27277890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 49505172 - 49505206
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattag 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  49505172 ttacactaaattatgtgattttctcaaattattag 49505206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 2620071 - 2620120
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||| ||||||||||||||||||| | ||||||||||| || |||||    
T  2620071 ttacacttaattatgtgattttctcaaatgattagtggtgtcggcgtgtc 2620120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 14840309 - 14840358
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||| |||||||||||||||| || |||||| ||||||||| |||||    
T  14840309 ttacactgaattatgtgattttctgaaattattaatggtgttggcgtgtc 14840358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17005637 - 17005682
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtg 46  Q
    ||||||| |||||| ||||||| |||| ||||||||||||||||||    
T  17005637 ttacactgaattatatgattttatcaaattattagtggtgttggtg 17005682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 32804558 - 32804591
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttatta 34  Q
    ||||||||||||||||||||||||||| ||||||    
T  32804558 ttacactaaattatgtgattttctcaaattatta 32804591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11493379 - 11493419
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgt 41  Q
    ||||||| ||||||||||||||||||  |||||||||||||    
T  11493379 ttacactgaattatgtgattttctcacattattagtggtgt 11493419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 24633799 - 24633767
Alignment:
Q  9 aattatgtgattttctcaatttattagtggtgt 41  Q
    ||||||||||||||||||| |||||||||||||    
T  24633799 aattatgtgattttctcaaattattagtggtgt 24633767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 55401116 - 55401076
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgt 41  Q
    |||||||||||||||||||||| |||| |||||||| ||||    
T  55401116 ttacactaaattatgtgattttttcaaattattagttgtgt 55401076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 9408352 - 9408401
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    |||||||||||||||||||||| |||| |||||| | |||| ||||||||    
T  9408352 ttacactaaattatgtgattttttcaaattattaattgtgtcggtgtgtc 9408401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 20549832 - 20549783
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||| ||||| ||||||||||||| ||||||| ||||| ||||||||    
T  20549832 ttacactgaattacgtgattttctcaaattattagcggtgtcggtgtgtc 20549783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 22868083 - 22868034
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||| ||||||||||||||||||  ||||||||||||| || |||||    
T  22868083 ttacactgaattatgtgattttctcatattattagtggtgtcggcgtgtc 22868034  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 27945082 - 27945033
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||| |||||||| |||||||||| ||||||||||||| || |||||    
T  27945082 ttacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtc 27945033  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 32308161 - 32308112
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    ||||||| ||||||||||||||||||| ||||||| ||||| || |||||    
T  32308161 ttacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtc 32308112  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 45056927 - 45056980
Alignment:
Q  9 aattatgtgattttctcaatttattagtggtgttggtgtgtccaagtcgtgtcc 62  Q
    ||||||||||||||||||| |||||||  ||||||| ||||||  |||||||||    
T  45056927 aattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtcc 45056980  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 15902863 - 15902823
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgt 41  Q
    |||||||||||||||||||||| |||| |||||| ||||||    
T  15902863 ttacactaaattatgtgattttatcaaattattattggtgt 15902823  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 27093431 - 27093471
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgt 41  Q
    |||||||||||||||||||||||| || ||||||| |||||    
T  27093431 ttacactaaattatgtgattttcttaaattattagcggtgt 27093471  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27184870 - 27184830
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgt 41  Q
    |||||||||||||||||||||||| || ||||||| |||||    
T  27184870 ttacactaaattatgtgattttcttaaattattagcggtgt 27184830  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 29763193 - 29763241
Alignment:
Q  2 tacactaaattatgtgattttctcaatttattagtggtgttggtgtgtc 50  Q
    |||||| |||||||||||||| |||| |||| ||| |||||||||||||    
T  29763193 tacacttaattatgtgattttttcaaattataagttgtgttggtgtgtc 29763241  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 29787387 - 29787427
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgt 41  Q
    ||||||| ||||||||||||||||||| ||||||| |||||    
T  29787387 ttacactgaattatgtgattttctcaaattattagcggtgt 29787427  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 26426 - 26394
Alignment:
Q  9 aattatgtgattttctcaatttattagtggtgt 41  Q
    ||||||||||||||||||| |||||||||||||    
T  26426 aattatgtgattttctcaaattattagtggtgt 26394  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 17767 - 17807
Alignment:
Q  1 ttacactaaattatgtgattttctcaatttattagtggtgt 41  Q
    |||||||||||||||||||||| |||| |||||||| ||||    
T  17767 ttacactaaattatgtgattttttcaaattattagttgtgt 17807  T

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