View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15118_high_5 (Length: 441)
Name: NF15118_high_5
Description: NF15118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15118_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 14 - 436
Target Start/End: Original strand, 6083260 - 6083682
Alignment:
| Q |
14 |
cagctatcagagaaaagtaaaaggcttgctaaaactgtgattgaaaattcttatcttaacaaatctattatcgcgaaagacaatttgattgatgatctga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6083260 |
cagctatcagagaaaagtaaaaggcttgctaaaactgtgattgaaaattcttatcttaacaaatctattatcgcgaaagacaatttgattgatgatctga |
6083359 |
T |
|
| Q |
114 |
gaagacaattgaatcaagcagacgtggatcgtaatgcattgatgattggattagagtctgttgagaaggataatacttctctgatgtatgaggctcgagt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6083360 |
gaagacaattgaatcaagcagacgtggatcgtaatgcattgatgattggattagagtctgttgagaaggataatacttctctgatgtatgaggctcgagt |
6083459 |
T |
|
| Q |
214 |
gcttcaaaaggaacttgatattcgaaatgaagtccaattttcaagagtaatgctttcgcaaacagcgtcaaaactgttgcaacttgaatctgagattgat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6083460 |
gcttcaaaaggaacttgatattcgaaatgaagtccaattttcaagagtaatgctttcgcaaacagcgtcaaaactgttgcaacttgagtctgagattgat |
6083559 |
T |
|
| Q |
314 |
tccaaaaaccaagtagcatcggagcagcctagaagtcatgttgcattgcaagagttatctttggcatcaatgtcttacattggcagtgatgacaatgtta |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6083560 |
tccaaaaaccaagtagcatcggagcagcctagaagtcatgttgcattgcaagagttatctttggcatcaatgtcttacattggcagtgatgacaatgtta |
6083659 |
T |
|
| Q |
414 |
gctgtggggagtcctttgcttct |
436 |
Q |
| |
|
|||| ||||||||||| |||||| |
|
|
| T |
6083660 |
gctgcggggagtccttggcttct |
6083682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 245
Target Start/End: Complemental strand, 39108062 - 39107915
Alignment:
| Q |
98 |
ttgattgatgatctgagaagacaattgaatcaagcagacgtggatcgtaatgcattgatgattggattagagtctgttgagaaggataatacttctctga |
197 |
Q |
| |
|
|||||||| ||||||| ||||||||||| |||||| || | |||| || |||| ||||| || |||||||||| |||||| |||||| ||||||||| |
|
|
| T |
39108062 |
ttgattgaggatctgaaaagacaattgactcaagctgaggcagatcatagtgcactgatggttagattagagtccactgagaaagataatgcttctctga |
39107963 |
T |
|
| Q |
198 |
tgtatgaggctcgagtgcttcaaaaggaacttgatattcgaaatgaag |
245 |
Q |
| |
|
||||||| ||||| ||| ||||||| || || || |||||||||| |
|
|
| T |
39107962 |
catatgaggtccgagtacttgaaaaggagctggagatccgaaatgaag |
39107915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 419
Target Start/End: Complemental strand, 39107438 - 39107390
Alignment:
| Q |
371 |
tctttggcatcaatgtcttacattggcagtgatgacaatgttagctgtg |
419 |
Q |
| |
|
||||||||||||| |||| | ||||||||||||||||| |||||||||| |
|
|
| T |
39107438 |
tctttggcatcaacgtctgatattggcagtgatgacaaggttagctgtg |
39107390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University