View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15118_high_6 (Length: 378)

Name: NF15118_high_6
Description: NF15118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15118_high_6
NF15118_high_6
[»] scaffold1215 (2 HSPs)
scaffold1215 (11-231)||(1940-2160)
scaffold1215 (263-364)||(1808-1909)
[»] chr2 (4 HSPs)
chr2 (11-231)||(10534752-10534972)
chr2 (11-230)||(10527853-10528072)
chr2 (263-364)||(10534620-10534721)
chr2 (264-364)||(10527713-10527813)
[»] chr3 (5 HSPs)
chr3 (263-364)||(34371364-34371465)
chr3 (10-116)||(34527866-34527969)
chr3 (10-69)||(27633994-27634053)
chr3 (10-232)||(34371117-34371333)
chr3 (10-69)||(34518812-34518871)
[»] chr6 (4 HSPs)
chr6 (11-163)||(24468169-24468321)
chr6 (14-119)||(24486440-24486546)
chr6 (14-163)||(24485721-24485870)
chr6 (10-163)||(24472475-24472630)


Alignment Details
Target: scaffold1215 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 2160 - 1940
Alignment:
Q  11 cacagaggaaaacaacatgagtgcttcatctccaacaacacctactgaggtgacacaaggttcttctgtttttaacaattttgattcgatgaagcttaaa 110  Q
    |||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2160 cacagaggaaaacaacatgagctcttcatctccaccaacacctactgaggtgacacaaggttcttctgtttttaacaattttgattcgatgaagcttaaa 2061  T
Q  111 ctttctgatctctatgagtgcgtgatggcattgagaaagatcagaactcatgggccagggaaaaaacttgatgggaataagtttgatgctgacagttctt 210  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2060 ctttctgatctctatgagcgcatgatggcattgagaaagatcagaactcatgggccagggaaaaaacttgatgggaataagtttgatgctgacagttctt 1961  T
Q  211 cttctggggatgaaaaaggtt 231  Q
    |||||||||||||||||||||    
T  1960 cttctggggatgaaaaaggtt 1940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1215; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 263 - 364
Target Start/End: Complemental strand, 1909 - 1808
Alignment:
Q  263 atgtgtgtgaaaaactgttcttttgcttaatagtggcataacaaaaatttaaaataaatgttgatacattagaaatgaagccagatcaataagttctgtt 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1909 atgtgtgtgaaaaactgttcttttgcttaatagtggcataacaaaaattaaaaataaatgttgatacattagaaatgaagccagatcaataagttatgtt 1810  T
Q  363 tg 364  Q
    ||    
T  1809 tg 1808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 10534972 - 10534752
Alignment:
Q  11 cacagaggaaaacaacatgagtgcttcatctccaacaacacctactgaggtgacacaaggttcttctgtttttaacaattttgattcgatgaagcttaaa 110  Q
    |||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10534972 cacagaggaaaacaacatgagctcttcatctccaccaacacctactgaggtgacacaaggttcttctgtttttaacaattttgattcgatgaagcttaaa 10534873  T
Q  111 ctttctgatctctatgagtgcgtgatggcattgagaaagatcagaactcatgggccagggaaaaaacttgatgggaataagtttgatgctgacagttctt 210  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10534872 ctttctgatctctatgagcgcatgatggcattgagaaagatcagaactcatgggccagggaaaaaacttgatgggaataagtttgatgctgacagttctt 10534773  T
Q  211 cttctggggatgaaaaaggtt 231  Q
    |||||||||||||||||||||    
T  10534772 cttctggggatgaaaaaggtt 10534752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 10528072 - 10527853
Alignment:
Q  11 cacagaggaaaacaacatgagtgcttcatctccaacaacacctactgaggtgacacaaggttcttctgtttttaacaattttgattcgatgaagcttaaa 110  Q
    ||||||||||||||||||| |  ||||||||||| ||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||    
T  10528072 cacagaggaaaacaacatgcgcacttcatctccagcaacacctactgaggtgccccaaggttcttctgtttttgacaattttgattcgatgaagcttaaa 10527973  T
Q  111 ctttctgatctctatgagtgcgtgatggcattgagaaagatcagaactcatgggccagggaaaaaacttgatgggaataagtttgatgctgacagttctt 210  Q
    ||||||||| |||||||  || ||| | ||||||||| ||||||||||||||| | | | ||||| |||| ||||||| |||||||||||||||||||||    
T  10527972 ctttctgatatctatgaacgcatgaggtcattgagaaggatcagaactcatggccgaagaaaaaatcttgttgggaatgagtttgatgctgacagttctt 10527873  T
Q  211 cttctggggatgaaaaaggt 230  Q
    ||| ||||||||||||||||    
T  10527872 cttttggggatgaaaaaggt 10527853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 263 - 364
Target Start/End: Complemental strand, 10534721 - 10534620
Alignment:
Q  263 atgtgtgtgaaaaactgttcttttgcttaatagtggcataacaaaaatttaaaataaatgttgatacattagaaatgaagccagatcaataagttctgtt 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10534721 atgtgtgtgaaaaactgttcttttgcttaatagtggcataacaaaaattaaaaataaatgttgatacattagaaatgaagccagatcaataagttatgtt 10534622  T
Q  363 tg 364  Q
    ||    
T  10534621 tg 10534620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 264 - 364
Target Start/End: Complemental strand, 10527813 - 10527713
Alignment:
Q  264 tgtgtgtgaaaaactgttcttttgcttaatagtggcataacaaaaatttaaaataaatgttgatacattagaaatgaagccagatcaataagttctgttt 363  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10527813 tgtgtgtgaaaaactgttctttttcttaatagtgccataacaaaaattaaaaataaatgttgatacattagaaatgaagccagatcaataagttatgttt 10527714  T
Q  364 g 364  Q
    |    
T  10527713 g 10527713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 263 - 364
Target Start/End: Original strand, 34371364 - 34371465
Alignment:
Q  263 atgtgtgtgaaaaactgttcttttgcttaatagtggcataacaaaaatttaaaataaatgttgatacattagaaatgaagccagatcaataagttctgtt 362  Q
    |||||| ||||||| |||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| ||||    
T  34371364 atgtgtatgaaaaaatgttcttttgtttaatagtggcattacaaaaattaaaaataaatgttgatacattagaattgaagccagattaataagttatgtt 34371463  T
Q  363 tg 364  Q
    ||    
T  34371464 tg 34371465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 34527969 - 34527866
Alignment:
Q  10 gcacagaggaaaacaacatgagtgcttcatctccaacaacacctactgaggtgacacaaggttcttctgtttttaacaattttgattcgatgaagcttaa 109  Q
    ||||||||||||||||| |||||   |||||| |||||||||||||||||||| |  ||| ||||||||||||| |||||||   ||| ||||| ||| |    
T  34527969 gcacagaggaaaacaacttgagt---tcatcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcacttcaatgaatcttga 34527873  T
Q  110 actttct 116  Q
    |||||||    
T  34527872 actttct 34527866  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 27634053 - 27633994
Alignment:
Q  10 gcacagaggaaaacaacatgagtgcttcatctccaacaacacctactgaggtgacacaag 69  Q
    |||||||||||||||||||  | ||||||||| |||||||||||||||||||| ||||||    
T  27634053 gcacagaggaaaacaacattggagcttcatcttcaacaacacctactgaggtgtcacaag 27633994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 34371117 - 34371333
Alignment:
Q  10 gcacagaggaaaacaacatgagtgcttcatctccaacaacacctactgaggtgacacaaggttcttctgtttttaacaattttgattcgatgaagcttaa 109  Q
    ||||||||||||| |||||||| ||||||||  ||||| |||| ||||||||| ||||| |   ||||| |||| ||||||| | ||| ||||||| | |    
T  34371117 gcacagaggaaaataacatgagagcttcatcatcaacagcaccaactgaggtgccacaaag---ttctgattttgacaatttggcttcaatgaagcctga 34371213  T
Q  110 actttctgatctctatgagtgcgtgatggcattgagaaagatcagaactcatgggccagggaaaaaacttgatgggaataagtttgatgctgacagttct 209  Q
    ||| |||||| || ||||   | ||| | ||||||||| ||||  || || | | ||| | ||| |  ||  ||| ||||||||||||||||||||   |    
T  34371214 actctctgatatcgatgaacacatgaggtcattgagaaggatccaaattcgtagcccaagaaaatatgttattggcaataagtttgatgctgacag---t 34371310  T
Q  210 tcttctggggatgaaaaaggttg 232  Q
    |||||||||||||||||||||||    
T  34371311 tcttctggggatgaaaaaggttg 34371333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 34518871 - 34518812
Alignment:
Q  10 gcacagaggaaaacaacatgagtgcttcatctccaacaacacctactgaggtgacacaag 69  Q
    |||||||||| ||||||||  | ||||||||| |||||||||||||||||||| ||||||    
T  34518871 gcacagaggacaacaacattggagcttcatcttcaacaacacctactgaggtgtcacaag 34518812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 24468169 - 24468321
Alignment:
Q  11 cacagaggaaaacaacatgagtgcttcatctccaacaacacctactgaggtgacacaaggttcttctgtttttaacaattttgattcgatgaagcttaaa 110  Q
    ||||||||||||||||  ||| |||||||||  |||||||| ||||||| ||  |||||||||||| |||||| |||||||||  || ||||||||| ||    
T  24468169 cacagaggaaaacaacgagagcgcttcatcttaaacaacacttactgagatgcaacaaggttcttccgttttttacaattttgcgtcaatgaagcttgaa 24468268  T
Q  111 ctttctgatctctatgagtgcgtgatggcattgagaaagatcagaactcatgg 163  Q
    |||| |||| || ||||  || ||| | ||||||||| |||||||| ||||||    
T  24468269 ctttatgatatcaatgaacgcatgaggtcattgagaaggatcagaattcatgg 24468321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 24486440 - 24486546
Alignment:
Q  14 agaggaaaacaacatgagtgcttcatctccaacaacacctactgaggtgacacaaggttcttctgttttt-aacaattttgattcgatgaagcttaaact 112  Q
    ||||||||||||| |||| ||||  ||| ||||||||||||||||| || ||||||||||||||||||||  ||||||||  ||| ||||||||| ||||    
T  24486440 agaggaaaacaacgtgagcgctttgtcttcaacaacacctactgagatgccacaaggttcttctgtttttgtacaatttttcttcaatgaagcttgaact 24486539  T
Q  113 ttctgat 119  Q
    |||||||    
T  24486540 ttctgat 24486546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 24485721 - 24485870
Alignment:
Q  14 agaggaaaacaacatgagtgcttcatctccaacaacacctactgaggtgacacaaggttcttctgtttttaacaattttgattcgatgaagcttaaactt 113  Q
    ||||||||||||| |||| ||||  ||| |||||||||||||| || || ||||||| | ||| |||||| ||| ||||| ||| ||||||||| |||||    
T  24485721 agaggaaaacaacgtgagcgctttgtcttcaacaacacctactaagatgccacaaggcttttccgttttttacagttttgcttcaatgaagcttgaactt 24485820  T
Q  114 tctgatctctatgagtgcgtgatggcattgagaaagatcagaactcatgg 163  Q
    |||||| || ||||  || ||| | |||||| || |||||||| ||||||    
T  24485821 tctgatatcaatgaacgcatgaggtcattgaaaaggatcagaattcatgg 24485870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 24472475 - 24472630
Alignment:
Q  10 gcacagaggaaaacaacatgagtgcttcatctccaacaacacctactgaggtgacacaaggttcttctgt--ttttaacaattttgattcgatgaagctt 107  Q
    ||||||||||||||||| |||| ||||  ||| ||||||||||||||||| || | ||||||| ||| ||  |||| ||  ||||  ||| |||||||||    
T  24472475 gcacagaggaaaacaacgtgagcgctttgtcttcaacaacacctactgagatgccccaaggtttttccgttctttttacggtttttcttcaatgaagctt 24472574  T
Q  108 aaactttctgatctctatgagtgcgtgatggcattgagaaagatcagaactcatgg 163  Q
     |||||||| || || ||||  || ||| | ||||||||| |||||||| ||||||    
T  24472575 gaactttctaatatcaatgaacgcatgaggtcattgagaaggatcagaattcatgg 24472630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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